Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4640 354 9e-93 seq322 232 8e-56 >seq4640 Length=97181 Score = 354 bits (392), Expect = 9e-93 Identities = 672/984 (68%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || |||| ||| |||| || || | ||| ||||| |||| || || || || Sbjct 47577 CAGGTGCTCATCCAAACACTGGATTGCAAAGAGGTCGACGTCCACGTCAAACTTGTTGGC 47636 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| |||||| || | || ||||||| | ||| || ||| || | ||| || Sbjct 47637 AAACAAATGGTGC---TTGCGCAGCATCCAGTTTAAGTCCCCCACCCCAAAAATGCACAC 47693 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| | ||| |||| || ||||| | || ||||| | || || ||||| Sbjct 47694 AGAACGCACGTGGATGCCACTGCAGGGTGGGTATGGGGCGCCTTTGGAAACATCGCCTTC 47753 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||| | ||| || ||||||||||| | ||||||||||| || |||| || || | Sbjct 47754 GTAGTAGTACCATTTGACAAACCTGGCAACTGCCTGCATGTCAGACATGTCATACTTATG 47813 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | ||| | ||||| || || |||| || | || | ||||||||| || | ||| Sbjct 47814 GCTTGCGGGGAGTGCACCAGGGACTTCGGGGATCCTTTGAATGGTGGCCCAGAGATATTC 47873 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAA--CCTGTCCCGC 160409 ||||||||||| ||||| || | ||| || || |||| | |||| | | | | Sbjct 47874 ATCGGGGCTGTAAGTGTCTTTCGCCCAGTCTATAAACTTTTGGATTTTTTCATTTTCT-- 47931 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || |||| | || ||| || | || ||||| || || ||||| || || | ||| Sbjct 47932 AGCACGTAACCTACATAGTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACACAGGT 47991 Query 160470 ATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 || | ||| ||| | ||||||| || ||||| || || | | | Sbjct 47992 ATTTCCAGAGGAGGCCTTGCTTTGTCTGCCCCTGTGTTTCTCAGTTTCCCATCAATGATT 48051 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | || ||||||||||||| | ||||| | |||||| || || || || ||| Sbjct 48052 TCATGATGCTTCTTCCACCTTTCTGCTTTGTGGGCTGGCATTTTCTCAGTTTCAAGGCTG 48111 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || |||| | || || |||| | |||| || || ||||| || || | ||||| Sbjct 48112 TTTTCACCCATTAATGACTTGAGCTTCCTGACAATTTCCAGGTTTGTTTTAATAGGAAAA 48171 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || |||| || | |||||||| ||| ||||| || || |||| | || ||| || Sbjct 48172 TCCATACCACAGAGGTTTATCAAGTATTTCCAGTTTGCACTCATTCTATAGAGCTCCTTC 48231 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | |||||||| || |||||||| ||||| || || || ||||| || | Sbjct 48232 ATGCAGTTGAGGTCTGCCTGGACCCGGCTCCATGAAGCATAGACCACATTCTCCAGCTGG 48291 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC-CAGAAAGAACAT 160828 |||||||||||||| ||| |||||| || | || || | ||| || | ||| | || Sbjct 48292 CTGGCCACAAAGACATTACTGAAACAGGATGCAATGCCTATCACTGCGCCTAAAAAGGAT 48351 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | ||||| |||||| || | |||||| | ||||||||| |||||||||||| Sbjct 48352 -TCCTCGGACTTTCTGTCCACATGTATGCAATAGAAATTCTGAGGCATGTAGATGGCCCT 48410 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | || ||||| || || |||||||| Sbjct 48411 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTACTATAGAATATGCAATCGGAAA 48470 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | |||||| || || | || | ||| || ||| ||||||| ||| Sbjct 48471 CTCTGCCTCCTCTTTGCTAAGCGGTTCGACAATGTATTTGCGCCTCTTGATGAAAGTTGT 48530 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| || |||||||| ||||| Sbjct 48531 ACAATCACGGGTCATGTTTATATA 48554 >seq322 Length=1596801 Score = 232 bits (256), Expect = 8e-56 Identities = 249/328 (76%), Gaps = 1/328 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | |||||||| |||||| || || || || || |||||||||||| Sbjct 143724 TAGAGGGTGAGGCAGGCTTTTCCAGCAATCTTCCCAGAGCCAAAGGTATTGAAGAGGCAC 143665 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | ||||| || ||||||| |||||||||||| || ||||| |||||||||| ||| Sbjct 143664 ATGTAACAGCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTTAGGGTTGAGTTTCTGAGC 143605 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | | | ||| | ||| ||||| || || |||||| || Sbjct 143604 CCCAGGTGTGTGATGTTTACTCTGCCCTCATAGGCAGGCTGAACCACGACCCCGTGGCTC 143545 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| ||||| ||||||| || ||||| |||||||| || |||||||| || || || Sbjct 143544 TTGCTGTAGGTGACCATGTTTTCTGGGCTTGTGGCCTTCATTTTCTGCCATGTCACCGTC 143485 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | | ||| | || ||||||| || || || | ||||| | ||||||||||| ||| Sbjct 143484 AAGATCTCCTGGTCAGTCTGCACAGAGCACCTTAAGGAAGCAGATGTGTTCAGCAGCTCT 143425 Query 168450 CGCTCATCTTGAGTTACGACCTGTCCCT 168477 | ||||| || ||| | | ||| |||| Sbjct 143424 CTTTCATCCTGGGTTGCCA-CTGGCCCT 143398 Score = 154 bits (170), Expect = 2e-32 Identities = 161/211 (76%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953 ||| || ||||| |||||||| || |||||||| ||||| ||| || || |||||| | Sbjct 146429 GTCAGTCACAGTCCCCAAATGCAGCACCTTGCAGATCACTTCT---TTCCCCACTTGAGT 146373 Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013 || || ||||| || |||| | || || ||| || ||||||||| | ||| | || Sbjct 146372 CTCAGGGTCTTTGACCTGTAGGACACTGGTGACAGACGTGGTTCCATTGGGGTGTGAGAC 146313 Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073 | | || ||||||||||||||||| || |||||||||||||| || | |||||| || Sbjct 146312 AATCTCAGTACTGTTCTCAATCCCTGACCCAGCCACCTTCCAGAAGATCAAAGGAGCTGG 146253 Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 || || || |||| |||||| ||||||||| Sbjct 146252 GCGGGCAGTGGCAGTGCAGGTGATATTTAAG 146222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576745202023440