Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq40669 457 3e-124 seq45266 387 4e-103 seq41696 268 3e-67 seq41690 134 4e-27 seq55422 125 2e-24 seq41688 116 1e-21 seq44086 113 1e-20 seq43227 113 1e-20 seq58044 98.7 3e-16 seq58212 95.1 4e-15 seq40944 87.8 5e-13 seq54774 80.6 8e-11 >seq40669 Length=879 Score = 457 bits (506), Expect = 3e-124 Identities = 393/488 (81%), Gaps = 5/488 (1%) Strand=Plus/Minus Query 7080 ACTGGGTGCAGTCGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGA 7139 ||||||||| || |||||||||||||||||||||| |||| | || |||||||||| Sbjct 488 ACTGGGTGCTTTCCCTTGATCCGGCGCGCGAATTCACCAGGATTTATTCCGCTCCGCTGA 429 Query 7140 TGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGG 7199 |||||||||| ||||||||| |||||||||||||| |||||| ||||||||||| |||| Sbjct 428 TGCTGCTGCCTGACCCTGACACATTCGTCTCCGTCGAACTGGTTTAACTTCCCCCCGTGG 369 Query 7200 CCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAGCTGATCGCTC 7259 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 368 CCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACCTAAAAAGAAAAGCTGATCGCTC 309 Query 7260 GCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGG 7319 |||||| |||| | ||| || | ||||||||||||||| ||||||||| || |||| | Sbjct 308 GCCTGAGTGACATGGGCGCTTAACTTAACCGCGAGGTCGGCACCAGCGTGACCATTCCAG 249 Query 7320 AACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATTG 7379 ||||||| |||||||||||||| ||||| ||||||| ||| |||||||||| ||| |||| Sbjct 248 AACTTACCATGCGTATTGCTGACCTGGACGAGGAGCCGGAGGGTGATGCCAATTCCATTG 189 Query 7380 ACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCA-NNNNNNNNNNNNNNNNNNNNNNN 7438 |||||||||||| | ||||||||||||||||||||| Sbjct 188 ACGGTGAAAACGTATAGAAGAATGCTCCCGACAGCACCGACAGATGAGAGATTCACCGAC 129 Query 7439 NNNGATGTAGATGGCACGGAAAAAGTAAAAACCGAAGCGGTCACAACGGATGACCGGGTA 7498 ||||| |||| | | ||| ||| |||| | | ||| | | |||||||||| | Sbjct 128 ATCTATGTATATGGTTC-GCAAATTTAATAACCTATTCAGTCTC-CCTGATGACCGGGAA 71 Query 7499 TCAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCT 7558 ||||| | ||||||| |||||||||||||||||||||||| || || |||| ||||| Sbjct 70 TCAGT-GGAACGCTGCTGACCTTGCACATAAACGCGCTTCTCG-CAATATTAACAAGTCT 13 Query 7559 GTGTCTAT 7566 |||||||| Sbjct 12 GTGTCTAT 5 >seq45266 Length=3747 Score = 387 bits (428), Expect = 4e-103 Identities = 381/481 (79%), Gaps = 15/481 (3%) Strand=Plus/Plus Query 7324 TACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATTGACGG 7383 |||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||| ||| Sbjct 3267 TACGATGCGTATTGCTGATGTGGAAAAGGAGCTGGATGGTGATGCCTGTTAGATTGTCGG 3326 Query 7384 TGAAAACGGAGAGAAGAATGCTCCCGACAGCANNNNNNNNNNNNNNNNNNNNNNNNNNGA 7443 |||||||||| ||||||||||||||||||| || Sbjct 3327 TGAAAACGGATAGAAGAATGCTCCCGACAGTTCCGACAGCACCGACAGCAGCGACAGCGA 3386 Query 7444 TGTAGATGGCACGGAAAAAGTAAAAACCGAAGCGGTCACAACGGATGACCGGGTATCAGT 7503 |||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||| Sbjct 3387 TGTAGATGGCACGGAAAAAGTAAAAACCGAAGTTGTCACTACAGATGACCGGGTGTCAGA 3446 Query 7504 AGAAACGCTGG-TGACCTTGC-ACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTG 7561 ||| || |||| | ||||||| | || ||||||||||||||| ||||||||||||||| Sbjct 3447 AGACACACTGGTTTACCTTGCAATATCTGCGCGCTTCACGCCACACGTAACGAGTCTGTG 3506 Query 7562 TCTATTGTCGAG-CCTGGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAA-CGACCTGA 7619 |||||||| | ||||||||||||||||| | |||||||||| ||||||| ||| || Sbjct 3507 TCTATTGTTATGCCCTGGTGTCGTTATCCGTGGGACTGACGTATAGGCTAAGAGACGTGT 3566 Query 7620 TATCTCGGGCGCTGGCCCGGG-AAATCTGACA-GGGGGCCTAATGGCTGATTTCGACAAT 7677 |||| | ||||||||||| |||||||||| ||||| |||||||||||||||| | | Sbjct 3567 GTCCTCGTGAGCTGGCCCGGGAAAATCTGACATGGGGGGCTAATGGCTGATTTCG-CCTT 3625 Query 7678 CTTT-TTGATGAATCGATGGCGC-GCGC-GGATAC-CACTATACGTGGATTGAT-GGGCG 7732 |||| ||||||| ||||||| | |||| ||| || | || | | ||||||| | ||||| Sbjct 3626 CTTTGTTGATGATGCGATGGCACGGCGCGGGACACACCCTGTGCTTGGATTGGTGGGGCG 3685 Query 7733 CAGAGGCAAGGATAACCT-CAGGA-TCTTTATCCGGCGTCAC-GCTCCGGGGGGTCTTTG 7789 |||||| |||||||| | || || ||||| | |||||| | | || |||||||||||| Sbjct 3686 GAGAGGCCAGGATAACGTACATGATTCTTTCCCAGGCGTCCCGGTTCGGGGGGGTCTTTG 3745 Query 7790 A 7790 | Sbjct 3746 A 3746 >seq41696 Length=2962 Score = 268 bits (296), Expect = 3e-67 Identities = 185/207 (89%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 7189 TCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAA 7248 |||||||| ||| ||| | |||| | ||||||||||||||||||||| || |||||||| Sbjct 209 TCCCCCAGCGGCTCTGCCAGGCCCCGGTTCTGGAGTATTTCCCATGACTGAAAAAGAAAA 150 Query 7249 GCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGG 7308 |||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 149 GCTGATTGCTCGCCTGAATGACCTTGGCACTCAGATTAACCGCGAGGTCCGCGCCAGCGG 90 Query 7309 CACGATTCAGGAACTTACGATGCGTATTGC-TGAGCTGGAAGAGGAGCTGGATGGTGATG 7367 ||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||| | | Sbjct 89 CACGATTCATGAACTTACGATGCGTATTGCTTGAACTGGAAAAGGAGCTGGATGGTTAAG 30 Query 7368 CC-AGTTCGATTGACGGTGAAAACGGA 7393 || | ||||||||||||||||||| || Sbjct 29 CCAATTTCGATTGACGGTGAAAACTGA 3 >seq41690 Length=2769 Score = 134 bits (148), Expect = 4e-27 Identities = 140/176 (80%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 7500 CAGTAGAAACGCTGGTGACCTTGCACATAAACGCGCTT-CACGCCACGCGTAACGAGTCT 7558 ||||| ||| || | ||| ||| ||||| |||||||| | |||||| |||||||||| Sbjct 2594 CAGTACAAAGGCGGTGGACGTTGAACATACACGCGCTTTCCCGCCACAAATAACGAGTCT 2653 Query 7559 GTGTCTATTGTCGAG-CCTGGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGACCT 7617 |||||||| ||| || ||| |||||| || || |||||||||| | | ||| ||||| | Sbjct 2654 GTGTCTATAGTCAAGCCCTAGTGTCGCTAGCCCCGTGACTGACTCATATGCT-ACGACGT 2712 Query 7618 GATATCTCGGGCGCTGGCCCGGGAAATCTGACAGGGGGCC-TAATGGCT-GATTTC 7671 |||||||||| |||||||| | | | |||||| ||| ||| |||||| | |||||| Sbjct 2713 GATATCTCGGTCGCTGGCCAGCG-AGTCTGACGGGGCGCCTTAATGGGTAGATTTC 2767 Score = 111 bits (122), Expect = 5e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 7146 TGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGT 7205 ||||| |||||||| ||||||||||||| |||||| ||||||| ||| ||||||||||| Sbjct 85 TGCCATACCCTGACTTATTCGTCTCCGTCTAACTGGTATAACTT-CCCAAGTGGCCCTGT 27 Query 7206 CGGGCCACCTTTCTGGAGTATTTCCC 7231 |||||||||||||||||||||||| Sbjct 26 GAGGCCACCTTTCTGGAGTATTTCCC 1 >seq55422 Length=2024 Score = 125 bits (138), Expect = 2e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 7297 CAGCACCAGCGGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCT 7356 |||| ||| ||||| | | |||| ||||||| ||| |||||||||| |||||||| | | Sbjct 1622 CAGCCCCAACGGCATTAATAAGGATCTTACGAAGCGAATTGCTGAGCAGGAAGAGGTGTT 1681 Query 7357 GGATGGTGATGCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCA 7415 ||||||||||||| |||||||||||| | |||||||||||| | |||||||| |||| Sbjct 1682 GGATGGTGATGCCCTTTCGATTGACGGGGTAAACGGAGAGAATTACGCTCCCGAGAGCA 1740 >seq41688 Length=3966 Score = 116 bits (128), Expect = 1e-21 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7161 CATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTG 7220 ||||| |||||| | ||||||||||| ||||||||| ||||||||| ||||||||||||| Sbjct 94 CATTCTTCTCCGACTAACTGGCATAAATTCCCCCAGGGGCCCTGTCTGGCCACCTTTCTG 35 Query 7221 GAGTATTTCCCATGACAGAGAAAGAAAAGCTGAT 7254 || |||||| ||| |||||||| |||| ||||| Sbjct 34 GATTATTTCTCATCTCAGAGAAAAAAAATCTGAT 1 >seq44086 Length=2110 Score = 113 bits (124), Expect = 1e-20 Identities = 267/403 (66%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 7285 TAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCT 7344 || ||| |||||| |||| ||| ||||| || | |||| ||||| ||||| Sbjct 454 TATCCGGGAGGTCTCAACCACGTTCACTATTCATTAAAATCAAATGCATATTGTTGAGCC 395 Query 7345 GGAAGAGGAGCTGGATGGTGATGCCAG-TTCGATTGACGGTGAAAACGGAGAGAAGAATG 7403 ||| ||||||||| || ||| ||| || |||||| || |||||||| || || Sbjct 394 GGATTAGGAGCTGGTTG-TGACGCCTTCTTAGATTGAAGGCAAAAACGGAACTTGGATTG 336 Query 7404 CTCCCGACAGCANNNNNNNNNNNNNNNNNNNNNNNNNNGATGTAGATGGCACGGAAAAAG 7463 |||||||||| | || | ||||| |||||| | Sbjct 335 CTCCCGACAGGGGCGATTGTACCTACATCAACTACAGCGTTGGAAATGGCGCGGAAATAA 276 Query 7464 TAAAAACCGAAGCGGTCACAACGGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGC 7523 ||||||| || | | | ||| |||| || | | | | | || | ||||| ||||| Sbjct 275 GAAAAACCCAATCAGACG-AACTTATGAGCGTGGACTAAAACAGACACAGGTGAACTTGC 217 Query 7524 ACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCG 7583 |||| |||||||||||||||| | || |||| |||||| ||| | | || | Sbjct 216 CTATAATCGCGCTTCACGCCACGATAAGCGCTAATGTGATTATTGTAGAG-CAGAAGTAG 158 Query 7584 TTATCCGCGTGACTGACGTAGAGGCTAACGACC-TGATATCTCGGGCGCTGGCCCGGGAA 7642 ||| | | || ||| ||||||||| |||||| |||||||||||| || || | | | Sbjct 157 ATAT-CAAGGGATTGAAGTAGAGGCTGACGACCATGATATCTCGGGGGCAGGGTCCGAGA 99 Query 7643 ATCTGAC-AGGGGGCCTAATGGCTGATTTCGACAATCTTTTTG 7684 ||| ||| |||||||| ||||| | | |||||||| ||| ||| Sbjct 98 ATCAGACGAGGGGGCCGAATGGGTCAGTTCGACAACCTTATTG 56 >seq43227 Length=240 Score = 113 bits (124), Expect = 1e-20 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 7095 GGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACC 7154 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 67 GGGATCCGGCGCGCGAATTCACCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACC 8 Query 7155 CTGACGC 7161 ||||||| Sbjct 7 CTGACGC 1 >seq58044 Length=1606 Score = 98.7 bits (108), Expect = 3e-16 Identities = 118/154 (77%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 7695 GGCGCGCGCGGATACCACTATACGTGGATTGATGGGCGCAGAGGCAAGGATAACCTCAGG 7754 || || |||||| | |||| || |||| ||||||||||| ||| | | || | ||| | Sbjct 149 GGGGCCCGCGGAAAA-ACTAGACATGGAGTGATGGGCGCACAGGGATG-ATCATATCACG 92 Query 7755 ATCTTTATCCGGCGTCACGCTCCGGGGGGTCTTTGACGATCCAGAGAACATTGGTTACGC 7814 |||| |||| ||| | || ||||| |||||| |||||||||| | |||||||||||| | Sbjct 91 ATCTCTATCGGGCTGC-CGATCCGGTGGGTCTCTGACGATCCATAAAACATTGGTTACAC 33 Query 7815 CGAAGTGGGGATCCGAAT-TGATGGAACCAGGCC 7847 | ||||||||| ||| |||||| |||||| Sbjct 32 --TATTGGGGATCCAAATGGGATGGATTCAGGCC 1 >seq58212 Length=770 Score = 95.1 bits (104), Expect = 4e-15 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 7105 GCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 7161 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 57 GCGCGAATTCACCATGATTCATTCCGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 1 >seq40944 Length=742 Score = 87.8 bits (96), Expect = 5e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 7106 CGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGACCCTGACGC 7161 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 56 CGCTAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCGAACCCTGACGC 1 >seq54774 Length=1330 Score = 80.6 bits (88), Expect = 8e-11 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 7556 TCTGTGTCTATTGTCGAGCCTGGTGTCGTTATCCGCGTGACTGACGTAGAGGCTAACGAC 7615 |||||| |||||||| || | ||||| || || |||| ||| | |||||||| || Sbjct 246 TCTGTG-CTATTGTCAAGACAGGTGTTCTTTTCTAT-TGACAGACTAACAGGCTAACAAC 189 Query 7616 CTGATATCTCGGGCGCTGGCCCGGGAAATCTGACAGGGG-GCCTAATGGCTGATTTCGAC 7674 |||| ||||| || || ||| | |||||||| |||| | ||| |||||||| | | Sbjct 188 CTGAAATCTCAGGTGCACGCCAGC-AAATCTGAATGGGGAGACTATTGGCTGATATAAAT 130 Query 7675 AATCTTTTTGATGAA 7689 ||||||||||||||| Sbjct 129 AATCTTTTTGATGAA 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147443287294336