Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3163 84.2 3e-11 >seq3163 Length=297541 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/208 (69%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 155797 TTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAA 155856 ||||| | ||| |||| || | |||||||||| ||| | ||||| | || ||||| | Sbjct 215148 TTTATTTTTAAATTTTAGGTCA--AAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGA 215091 Query 155857 CTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAG 155916 | || || | || || ||| ||||| ||| || |||||| || || || | Sbjct 215090 CCATCACTCTGGAGGTGGAACCCAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGG 215031 Query 155917 ATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAG 155976 ||||||||||||| ||||| || || || || | || | ||| || |||||||| || | Sbjct 215030 ATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGG 214971 Query 155977 ATACCAGAACTTTATCAGATTATAATAT 156004 || | | ||| | || || || || || Sbjct 214970 ATGGCCGCACTCTTTCTGACTACAACAT 214943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731271005010400