Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2502 123 5e-23 seq3163 100 6e-16 seq1368 89.7 1e-12 >seq2502 Length=682766 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | ||| | ||||| ||| || || ||| Sbjct 412799 ATCCCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCA 412740 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||| ||||| ||||||||||| || ||||| || |||||| Sbjct 412739 GACAAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGT 412680 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || | || Sbjct 412679 GGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 412620 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||||||||| ||||| ||||| | ||| ||||||||| Sbjct 412619 ACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 >seq3163 Length=297541 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || || ||||| | || | ||| | ||| | ||| || ||| || || ||||| Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || ||| ||||| || | ||| | ||| || Sbjct 215018 ATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACC 215077 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| ||||| | ||| || |||||||| Sbjct 215078 TCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq1368 Length=2199528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||| | |||||| ||| || || ||||| | || || |||| |||| || Sbjct 788886 ATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTG 788827 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||| | ||||| || ||||| || || ||||||||||| || || || Sbjct 788826 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTT 788767 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| || | ||| | ||| || || ||||| ||||| || || || Sbjct 788766 GCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGT 788707 Query 192513 TAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | ||| || || |||| Sbjct 788706 TACGGTTTTTACAAAAATTTGTGTTTT 788680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983651358876900