Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1570 95.1 4e-14 >seq1570 Length=782280 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || || || || ||||| || || ||||||| ||||| ||||| Sbjct 55267 ACCAGTCTCAGCAGTCTTGACGGCGGTGTCAATAAGCCCCTCACGACCCCCCATGGCATG 55326 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||||| | ||| ||| || || | | ||||| |||| || |||||||| Sbjct 55327 AAAGAAGAACTCAGTGGGTGTGAGGCCAGCCAGGTAGGAGTTCTCCACAAAACCACGGCT 55386 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| |||| | ||||| ||||| || | || || | | || |||| Sbjct 55387 CTCAGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTTCGGTGCTTAAACCCAAATGG 55446 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || ||||||||||| || Sbjct 55447 GATCCGCTTGCCCTCCACGTTCTGCTGCCC 55476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470578764686878