Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2502 140 3e-28 seq3414 109 5e-19 seq2217 107 2e-18 seq875 100 3e-16 seq1059 89.7 5e-13 seq3163 87.8 2e-12 >seq2502 Length=682766 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | ||||| |||| |||||||| || || || || || || || Sbjct 412567 ACAATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCC 412626 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||||||| ||||| || || || || Sbjct 412627 AGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 412686 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||| |||||||||||||| ||| | | | |||| || || Sbjct 412687 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTAC 412746 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || ||||| || || |||||||| Sbjct 412747 AACATCCAGAAAGAATCCACTCTGCACTTGGT 412778 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || |||||||| ||| Sbjct 414029 GATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAG 414088 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || ||||| || || Sbjct 414089 TGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 414148 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||| ||||| |||||||||||||| ||| | | | |||| || || || Sbjct 414149 GCAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 414208 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || ||||| || || ||| |||| |||| ||| | ||||| Sbjct 414209 CATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 414256 >seq3414 Length=315879 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || || || || | ||| Sbjct 11169 GATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCAG 11228 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| || ||||||||||| || || || || || || | Sbjct 11229 TGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAA 11288 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| |||||| | ||| ||||||||||| | | | ||||| || || Sbjct 11289 GCAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAA 11348 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || || || || || || || ||||| |||| |||| || ||| | |||||| Sbjct 11349 CATCCAGAAAGAGTCCACTCTGTACCTGGTGCTGCGTCTGCGTGGTGGCATCATTGAGCC 11408 >seq2217 Length=590369 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 |||||||||| | || || || || || || || || || ||||| || || ||| || Sbjct 77282 GCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGTGA 77223 Query 24766 CACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACA 24825 || | |||| || ||| || ||||||||||| || || || || || || || || Sbjct 77222 CATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCA 77163 Query 24826 ACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACAT 24885 ||| |||| |||||| | |||||||||| |||| | | | ||||| || ||||| Sbjct 77162 GCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACAACAT 77103 Query 24886 TCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || || | | || ||| ||||| |||| ||||||| || |||||||| Sbjct 77102 CCAGAAAGAGTTCCCCCTGCACCTGGTGCTGCGTCTGCGCGGTCGCATCACTGAGCC 77046 >seq875 Length=1260434 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || | ||| | || ||| | | Sbjct 610511 GATGCAGATTTTCGTGAAGACCCTCACAGGAAAGACCGTTGCCCTCAAGGTTGAACCTTC 610452 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| ||||||| | || ||||| || ||||| ||| | Sbjct 610451 GGACACCATAGAAAATGTAAAGGCCGAGATCCAGGGTAAGGAAGGGATTCCTCCTGATTA 610392 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | || | ||||| || | || ||||| ||| | | | ||||||||||||| Sbjct 610391 GCAGAGGCTGCTGTTTGCTGGCCAGCAACTGGAAGATGGACGGACCTTGTCAGATTATAA 610332 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| ||||| || || | |||||| || | || || || Sbjct 610331 CATTCAAAAGGAGTCGACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 610284 >seq1059 Length=696884 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| |||||||| | || || || || || || || || | ||||| || || ||| Sbjct 62234 GATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCAG 62175 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || ||| || ||||||||||| || || | ||| || Sbjct 62174 TGACCCA-TCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCA-------CGACCA 62123 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| |||||||| ||||||||||||||| | | | ||||| || || Sbjct 62122 GCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAA 62063 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGC 24917 ||| || || || || || || | | ||||| ||| Sbjct 62062 CATCCAGAAAGAGTCCACCCTGCCCCTGGTGCTGC 62028 >seq3163 Length=297541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| ||||| || || || || || || || || ||| ||| Sbjct 215124 ATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGT 215065 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| || || |||||||| || ||||| || || Sbjct 215064 GATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAG 215005 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||||||| | | | || || || ||| Sbjct 215004 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTACAAC 214945 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 214944 ATCCAGAAGGAGTCAACTCTGCATCTTG 214917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449528155338320