Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq1338 86.0 6e-12 >seq1338 Length=782664 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 6409 TGATTGTAATAGCGGCTCATGGTGCGCATGTTCAGGCGGAAGATCTTCTGCGTCTCCCGC 6468 || ||||| |||| || || |||||||| |||| ||| | |||| || || || Sbjct 78503 TGGTTGTAGTAGCCGCGCAGGGTGCGCAGGTTCCCTCGGTACATCTGCT-CGCAGCCTTT 78445 Query 6469 G-CGTTCTTGTTCTGATCGGTCCAGTACTTCGTCTCGTTGGTCACGTTCCACGGCACGCT 6527 | |||||| ||| |||| |||||||| || | | | | | |||||||| | | Sbjct 78444 GGCGTTCTGCGTCTCCTCGGCCCAGTACTCCGGCCCCTCCTGCTCTGTCCACGGCGCCCG 78385 Query 6528 GGCGACCACCCGCGGGTCGGTGGAGTTGCTGTCGAAGCGGACGATCTCCGTGTCGTCCAC 6587 | ||| || ||| || | | || ||||||| | || |||| || |||||||||||| Sbjct 78384 CGGCTCCATCCTCGGATCCGCCGCGTCGCTGTCGTAACGCACGAACTGCGTGTCGTCCAC 78325 Query 6588 GTAGCCCACGACCAGGTACCGGGGGT 6613 |||||| ||||| | | | ||||||| Sbjct 78324 GTAGCCGACGACAATGAAGCGGGGGT 78299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475650686539120