Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2502 134 9e-27 seq2217 127 1e-24 seq1059 127 1e-24 seq3414 123 2e-23 seq336 109 4e-19 seq3163 93.3 3e-14 >seq2502 Length=682766 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||||||| | ||| || ||||| ||||| ||||| || Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || || || || |||| | |||||||| | || Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | || | ||| ||| ||| || Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACT 414077 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| || ||||| ||||| |||||||| || ||||||||||| Sbjct 414076 TCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| || ||||| ||||| ||||| || | | | || |||| Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || || ||||||| | |||||||| | || | || |||||||| Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| ||| || |||| ||| |||| Sbjct 412661 TGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGG 412604 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || ||||| | ||| ||||||||||||||||| Sbjct 412603 TTTTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq2217 Length=590369 Score = 127 bits (140), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || | ||| ||||| ||||| ||||| || || ||| |||| Sbjct 77072 CAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 77131 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| || || | ||| || ||||| || |||||||| | || | ||||||||||| Sbjct 77132 CCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 77191 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| | | || ||| ||| ||| |||||| || | || |||| Sbjct 77192 TTGGATTTTGGCTTTGACATTTTCGAT-GATGTCACTGGGCTCGACCTCGAGAGTGATGG 77250 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 |||| || ||||||||||| |||||||||||| Sbjct 77251 TCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 >seq1059 Length=696884 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 14/216 (6%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||| | | |||| ||| ||||| ||||| ||||| || || |||| |||| Sbjct 62029 CAGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 62088 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || ||||| || ||||| || |||||||| ||| |||||||||| Sbjct 62089 CTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCGTGC-------CCTCCTTGTC 62141 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT---TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| |||||| || | ||||| ||| ||| |||||| || | | || Sbjct 62142 TTGGATTTTGGCTTTGAC--AT--TTTCGATGGGTCACTGGGCTCGACCTCGAGAATGAT 62197 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| |||||||||| ||| Sbjct 62198 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTACAT 62233 >seq3414 Length=315879 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | ||| ||| ||||| ||||| ||||| || || ||| |||| Sbjct 11382 CAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 11323 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| | || | ||| || ||||| || |||| ||| | || | ||||||||||| Sbjct 11322 CTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTC 11263 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| ||| || ||| |||| || ||||| Sbjct 11262 TTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGT 11203 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||||||||| |||||||||||||| Sbjct 11202 CTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq336 Length=3219352 Score = 109 bits (120), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || || ||||| ||| | |||||||| || ||| | |||| Sbjct 1022868 CAGCACCAGGTGTGGGCTGGACT--TTCTGGATGCTGTAGTCCGAGAGACTGTGGCCATC 1022811 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || | | ||| || ||||| || ||||||| | | | ||||||||||| Sbjct 1022810 CTCCAGCTGTCTGCTGGCAAAAATCAGACGCCGCTGGTCAGGTGAGATGCCCTCCTTGTC 1022751 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| ||| || || ||| ||| ||||| || | || ||||| Sbjct 1022750 TTGGATTTTGGCTTTGACATTTGCAATGGAATCACTGGGCTCGAACTCCAGAGTGATGGT 1022691 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||||||||| | |||||||||||||| Sbjct 1022690 C-TTCCTGTGAGGGTC-TCACAAAGATCTGCAT 1022660 >seq3163 Length=297541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || |||| |||| ||||| ||||| || || || Sbjct 214933 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 214992 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || | |||||||| | || | || || || || | || || ||| || | Sbjct 214993 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGGCTTTCAC--A 215050 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| ||| || || || | || ||||||||||| || ||||| ||| Sbjct 215051 TTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTT 215110 Query 34964 ACAAAGATCTGCAT 34977 ||||| || ||||| Sbjct 215111 ACAAAAATTTGCAT 215124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325432035484586