Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3163 102 6e-17 seq1368 84.2 2e-11 seq2502 82.4 6e-11 >seq3163 Length=297541 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||||||||| ||||| ||||||| || ||||| || | || ||| | Sbjct 215127 AAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 215068 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| | | | || ||| |||||| |||||||||||| | || || Sbjct 215067 AGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 215008 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || ||||||||||| | | || | | |||||| Sbjct 215007 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCTGACTAC 214948 Query 107733 AACATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || |||||||| || |||| Sbjct 214947 AACATCCAGAAGGAGTCAACTCTGCA 214922 >seq1368 Length=2199528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||| ||||||||||| ||||| ||||||| || ||||| || | || ||| | Sbjct 788680 AAAACACAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCC 788739 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| | | | || ||| |||||| |||||||||||| | || || Sbjct 788740 AGTGATACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGAC 788799 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || ||||||||||| | || | | |||||| Sbjct 788800 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTAC 788859 Query 107733 AACATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || || ||||| || |||| Sbjct 788860 AACATCCAGAAAGAGTCAACTCTGCA 788885 >seq2502 Length=682766 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| ||||| || |||||||| ||| | || |||| | | Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||| || || |||||| | || || || Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || ||||||||||| || | || || | |||||||| Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || || || || || ||||| |||| Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGT 412778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398557441035166