Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1368 93.3 7e-14 seq3163 91.5 2e-13 >seq1368 Length=2199528 Score = 93.3 bits (102), Expect = 7e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || ||||||| |||||||||| || || ||| | || || |||| | ||| Sbjct 788686 CAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGAT 788745 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | ||||| ||| || || || |||||||||||| || || || || || Sbjct 788746 ACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAG 788805 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 || ||||| |||||||| || || | || ||| | | || | | || || || || Sbjct 788806 AGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATC 788865 Query 146214 CAAAAAGAATCGACTATCCAT 146234 || ||||| || ||| | ||| Sbjct 788866 CAGAAAGAGTCAACTCTGCAT 788886 >seq3163 Length=297541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| |||||||||| || || ||| | || || |||| | | Sbjct 215123 TGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTG 215064 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || |||||||||||| || || || || | Sbjct 215063 ATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGC 215004 Query 146152 AAAGACTCATTTTTGCAGGTAAACA 146176 | || ||||| |||||||| || || Sbjct 215003 AGAGGCTCATCTTTGCAGGCAAGCA 214979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785520819806480