Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2502 145 6e-30 seq3414 98.7 8e-16 seq2217 96.9 3e-15 seq875 87.8 1e-12 >seq2502 Length=682766 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || ||||| || || ||||||||||| || ||||| || || | Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || ||||| |||||| | ||||| || ||||| || || || Sbjct 412736 AAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 412677 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | |||||| | || || Sbjct 412676 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 412617 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || ||||| || ||||||||||| ||||| ||||||||| Sbjct 412616 TCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||||||||| || ||||| || || | Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| |||||| | ||||| || ||||| || || ||| Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | |||||| | |||||| Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACT 414077 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || | ||| || || || |||||||| Sbjct 414076 TCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq3414 Length=315879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| | || ||||| ||||| || ||||| || || | Sbjct 11396 CCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 11337 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| ||| || || | ||||| ||| | |||| | |||| || || || Sbjct 11336 AGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGG 11277 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| |||| | |||||| | | || Sbjct 11276 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACC 11217 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | ||| || ||||| |||||||| Sbjct 11216 TCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 || ||||||||||| || || | | | ||||| || ||||| || || | | |||| Sbjct 77066 CAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCA 77125 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| | || ||||||| ||| | |||| | ||||| || || || || ||||| Sbjct 77126 GCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 77185 Query 29688 TTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||||||| | ||| ||||||| |||| | ||||| | || || || ||||| Sbjct 77186 CTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGT 77245 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 || || ||||| || | ||| || ||||| |||||| ||| Sbjct 77246 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTTT 77286 >seq875 Length=1260434 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||||||||| | | ||| || ||| Sbjct 610298 CAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTCCGTCCATC 610357 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| | ||||||| | | || || |||| ||| || ||||| || || || | Sbjct 610358 TTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTTCCTTACC 610417 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | | || ||| |||||| ||||| ||| |||| || | || | | || Sbjct 610418 CTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGGCAACGGT 610477 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 610478 CTTTCCTGTGAGGGTCTTCACGAAAATCTGCATCTT 610513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384910775932854