Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2716 158 9e-33 seq3 122 7e-22 seq280 104 2e-16 seq2091 98.7 7e-15 >seq2716 Length=930914 Score = 158 bits (174), Expect = 9e-33 Identities = 929/1477 (63%), Gaps = 20/1477 (1%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| || || || || || |||| |||| || ||||| | ||| || ||||| || Sbjct 423196 ATTGGTGATGGTGATCTTGTTGGCTTTGCCAGTGCTCTTATCGGTGGCCGTGACATTCAG 423255 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 || || |||||||| | ||||| || || ||||| ||||| || || || | ||||| Sbjct 423256 GATGCCGTTGGCATCGATGTCAAAAGTCACCTCAATCTGAGGAACTCCCCTGGGTGCAGG 423315 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || || | ||| ||||| ||| || ||| || | | || Sbjct 423316 AGGGATTCCAGTCAGGTCAAAGCGCCCCAGCAAATTGTTGTCTCGGGTCATGGCCCTCTC 423375 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 |||||| | | ||||| || ||| || |||||||| || || ||||| | ||| Sbjct 423376 ACCCTCATATACCTGGATCAGGACCCCAGGCTGGTTATCTGAGTAGGTGGTAAAGA-TCT 423434 Query 281620 GGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | | ||| || || || | || | | || | ||||| | || |||| Sbjct 423435 GTGTCTGTTTGGTGGGGATGGTAGAATTACGTTTGATCAGGACAGTCATCACGCCCCCAG 423494 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 ||||||| ||||| || || | |||| || || | | | | | || | |||| Sbjct 423495 CTGTTTCCAAACCTAGGGACAAGGGAGCCACGTCCAACAAAAGCAGGTCCTGTACCTTTT 423554 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 || | | ||| | | ||| ||||| || | ||||| ||||| || || || |||| Sbjct 423555 CAGACTTGTCACCCATCAAAATCGCTGCCTGTACTGCAGCCCCATAGGCTACTGCCTCAT 423614 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-T 281857 |||| || | | | || || | |||||| || | | || ||| ||| | Sbjct 423615 CAGGGTTGATGCTCTTGTTGAGCTCACGACCATTAAAGTAGTCCTGCAGTAGTC-TCTGT 423673 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 ||||| || ||||| | || || || || || ||||| ||||| | | | ||||||| Sbjct 423674 ACCTTGGGGATACGGGTGGAGCCCCCTACCAAAACAATGTCATGGATTTTAGCTTTATCC 423733 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | ||| | | | || || || || || | | | ||||||||||||| | Sbjct 423734 ATCTTAGCATCACGCAGAGCCTTCTCCACAGGCTCCAAGGTACCCCTAAACAAGTCTGCA 423793 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 282037 || | ||||| || |||||| |||| | || | ||||| || || || | Sbjct 423794 CACAACTCTTCAAACCGAGCTCTGGTAATGGATGTATAGAAGTCAATGCCCTCAAATAGG 423853 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 || || | || | | | || || || || || | | || || | || || Sbjct 423854 GAGTCGATCTCCAGGTTGGCCTGGGTGCTGGATGACAGGGTCCTCTTGGCCCTCTCGCAG 423913 Query 282098 GCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATATTT 282153 || || | || || | | || |||| | ||| |||| || | || | || Sbjct 423914 GCAGTGCGCAGCCTCCTCACAGCTCGCTTGTTCTGGCTGATG----TCCTTCTTGTGCTT 423969 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 |||||||| || || || | | || | | || ||||| || || || |||| Sbjct 423970 CCTCTTGAACTCCTCCACGAAGTGGCTCACCAACCTGTTGTCAAAGTCCTCCCCACCCAG 424029 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | || | || | || ||| | || | |||| ||||| || | || | || | Sbjct 424030 GTGGGTGTCCCCGGCAGTGGCTTTCACCTCAAAAATACCATCATCTATAGTTAGAATGGA 424089 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGG 282331 |||||| || || ||||| | |||||| || || || | || | || || | | Sbjct 424090 CACATCAAACGTACCTCCACCTAGATCAAAGATCAGGACGTGTCGCTCTCCATGACCTCC 424149 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||| ||| | ||| || |||| |||||||| || |||||||| || ||||| | || Sbjct 424150 TTT--ATCTAAACCGTAGGCAATGGCAGCAGCTGTGGGTTCATTGATGATTCTTAGCACG 424207 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| || ||||| || ||||| || | |||||| || || ||||| Sbjct 424208 TTGAGTCCTGCAATAACACCCGCATCCTTGGTGGCCTGGCGTTGTGAGTCATTGAAATAG 424267 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || || || |||| || || | || | | |||| || || | Sbjct 424268 GCTGGCACTGTGATCACAGCATTGGTAACAGTGTGCCCCAAAAAAGCCTCAGCAGTCTCC 424327 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||| ||| | | | ||| || || |||| || ||| | | || ||| | Sbjct 424328 TTCATCTTAGTCAGCACCATAGAAGAGATTTCCTCAGGATAGAAGGCTTTATTTTCTCCT 424387 Query 282572 TGATATGATACTTCAAAATAT--GGTTTATTACCAACATTAATAACTTTAAATGGCCAAT 282629 | ||| || || ||| | | || || || ||||||| |||| ||| |||||| Sbjct 424388 TTATAGGACAC--CAACACCTTGGGCTTGCCCCCCTCATTAATCACTTGAAAAGGCCAAA 424445 Query 282630 ATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCAT 282689 |||||||||||| || || | |||||||| | || || || || ||||| |||| Sbjct 424446 GTTTCATATCTGACTGCACCACAGGATCATTAAATTTCCTTCCGATCAAACGTTTGGCAT 424505 Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | ||| || ||||| | || | || | ||||||||||| || || || Sbjct 424506 CAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCTGCATCCCCTATGAGTC 424565 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| || || || || | || || || || ||||| || || || || || || | Sbjct 424566 GTTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCGA 424625 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | || || || || || | || | || || ||||| Sbjct 424626 TGATCTCCACCTTGCCGTGCTGGAACACCCCCACACA 424662 >seq3 Length=4708640 Score = 122 bits (134), Expect = 7e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || |||||||||| ||||||||||||||| ||||| || ||||||| ||| Sbjct 2000168 TTTTTGTCTAGGCCATACGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTCAGTACA 2000109 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||||||||| || || || || | || || || ||||| || Sbjct 2000108 TTGAGGCCAGCAATGGTTCCTGCATCCTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAC 2000049 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | ||| |||| Sbjct 2000048 GCTGGTACAGTGACAACAGCAT 2000027 Score = 122 bits (134), Expect = 7e-22 Identities = 360/550 (65%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| |||||||| |||| | | || | || ||| |||||||| Sbjct 2000815 GCACCATAAGCAACAGCCTCATCAGGGTTAATGCTCTTGTTCAATTCTTTTCCATTGAAG 2000756 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| ||| |||| ||| | |||||||||||| | || || || || | ||||| Sbjct 2000755 AAATCCTGAAGCAGTT-TCTGAATCTTAGGAATACGGGTAGAGCCGCCCACGAGAACAAT 2000697 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| || || || || || | |||| | |||| || || || || || Sbjct 2000696 GTCATGTATCTGAGACTTGTCTAGCTTGGCATCCCTCAGGGCTTTCTCCACAGGGTCCAG 2000637 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | || | ||| | | | |||||| ||| ||| | |||| | | || Sbjct 2000636 AGTGCCACGGAAGAGGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGTATA 2000577 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | | || |||||||| | | ||| |||| || || | | || || || || || Sbjct 2000576 AAAGTCGATTCCTTCATAGAGAGAGTCAATCTCGATACTGGCCTGGGTGCTGGAGGACAG 2000517 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 282131 | |||||| ||||||||||| || || | || | || | || ||| | || | | Sbjct 2000516 AGTACGTTTTGCACGTTCACAAGCAGTACGGAGGCGACGAACAGCCCTCTTGTTCTCAGT 2000457 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 ||| || | |||| ||| | |||||| || ||| | | | || | | | Sbjct 2000456 GAT----GTCCTTCTTATGTTTGCGCTTGAACTCAGCAATAAAGTGATTCACCATCCTGT 2000401 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||||||||| || ||||| | |||| ||| | || | | | || | || | || Sbjct 2000400 TATCAAAATCTTCTCCACCCAAGTGGGTATCTCCAGCTGTGGATTTGACCTCAAAGATTC 2000341 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| || | | | ||||| || ||||| |||| |||||| || || | Sbjct 2000340 CATCTTCAATAGTGAGGATTGACACATCGAAAGTGCCACCTCCCAAATCAAAGATCAGCA 2000281 Query 282312 CATTCATTTC 282321 |||| |||| Sbjct 2000280 CATTTCTTTC 2000271 >seq280 Length=2099476 Score = 104 bits (114), Expect = 2e-16 Identities = 227/327 (69%), Gaps = 11/327 (3%) Strand=Plus/Plus Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 |||||||| ||||| | |||||| ||||||||||||||||| | || | | || ||| Sbjct 1686900 CCACCAGCAGTTTCCATACCAAGGGAAAGAGGAGTGACATCCAAGAGCAGCAAATCTTG- 1686958 Query 281732 AGTTTTTCATCAG-TTTG-ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 ||||||| |||| |||| |||| | || ||||| || | || |||||||| |||| Sbjct 1686959 AGTTTTT--TCAGATTTGCACCAGGTAAGATGGCTGCCTGGACAGATGCACCATAAGCAA 1687016 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGA 281848 || |||| | || | | | |||| | ||| |||||||| |||| |||||| | Sbjct 1687017 TAGTCTCATTGGAGTTCATGCTCTTCTTTAAGTCTTTCCCATTGAATAAATCTTGAAA-A 1687075 Query 281849 AGTTGTCT-TACCTTAGGAATACGAGAT-GATCCTCCAACTAATACAATTTCATGCACCT 281906 |||| ||| | ||| | |||| ||| | || || || || | ||||| ||||| | || Sbjct 1687076 AGTT-TCTGAATCTTGGCAATA-GAGGTAGAACCGCCCACCAGGACAATGTCATGGATCT 1687133 Query 281907 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966 |||| || || | || | |||| | |||| || || || || ||| | | | Sbjct 1687134 GTGACTTGTCTATGTTGGCATCCCTAAGGGCTTTCTCCACAGGGTCCAGAGTGCCACAGA 1687193 Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATT 281993 ||| ||| | | |||||||| |||| Sbjct 1687194 ACAGGTCAGCATTCAGTTCTTCAAATT 1687220 >seq2091 Length=1438649 Score = 98.7 bits (108), Expect = 7e-15 Identities = 200/295 (68%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTC 281319 |||| |||| ||||||||| ||| ||||| | || ||| || ||| | || | Sbjct 369719 ATAACTTTCCAATTCATTTCTAGTATCAATTCGTTCCTTGAGCTTTTTGTCTTCCTCAGC 369778 Query 281320 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGC 281375 ||||| || || || ||| ||| || ||||||| || ||||| || || Sbjct 369779 AAATTTTTCGGCATCATTAACCATCCTTTCAATTTCTTCAGGTGTCAGACGATTTT---- 369834 Query 281376 GATTATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCA 281432 | | ||| ||||| || || || || |||||| ||| || || | || |||| Sbjct 369835 GGTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCA 369891 Query 281433 CATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCT 281492 | |||||| ||||| |||| | ||||| |||||||||||||| ||||| || | Sbjct 369892 CTCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATTTGTGGGACACCACGGG 369951 Query 281493 GAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 |||||||||| || || || || ||| || |||||| || ||| ||||| || Sbjct 369952 GAGCAGGTGGAATTCCAGTCAGATCAAACGTACCCAGAAGATGATTGTCTTTTGT 370006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737405102222844