Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3650 89.7 5e-13 >seq3650 Length=357111 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | ||| |||||| | ||| | ||||| |||| || | |||||| Sbjct 162032 AGCATATGGGGACCAACCTGTGATGGCCTTGATCGGATTGTGGAGCGCTGCAACCTGCCA 162091 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||| | || ||||| |||||| | | |||||||||||||| ||||||| ||| | || Sbjct 162092 GAGATGCACGTGGGTGACTGGATGCTGTTTGAAAACATGGGTGCTTACACAGTGG-CTGC 162150 Query 21245 T-CTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 | | || || || || || |||| | |||| Sbjct 162151 TGCCTCCACGTTCAATGGGTTCCAGAGGCCA 162181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463164947941920