Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2502 168 1e-36 seq2217 113 9e-20 seq875 100 6e-16 seq3107 98.7 2e-15 seq2946 96.9 7e-15 seq1059 91.5 3e-13 seq1852 84.2 4e-11 >seq2502 Length=682766 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| ||||| ||||||||||| ||||||||||| || || || ||||| Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || ||||| ||||||||||| | || || || || || || Sbjct 412736 AAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 412677 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| |||||||| || ||||| || || || ||| | || || || Sbjct 412676 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 412617 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || || || |||||||| ||||||||| Sbjct 412616 TCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || | ||||||||| ||||||||||| || || || ||||| Sbjct 414257 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGA 414198 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| |||||||| || | || || || || ||||| Sbjct 414197 CAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 414138 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| || || || || || || || ||| | || ||||| Sbjct 414137 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTAC 414078 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || ||||| || |||| ||||| || || |||||||| Sbjct 414077 TTCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| ||||| | ||||||||| || |||||||| || || || ||||| Sbjct 414028 CCACCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 413969 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG 82699 || | | ||| ||||| || || || ||||||||||| | || || || || || Sbjct 413968 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGG 413913 >seq2217 Length=590369 Score = 113 bits (124), Expect = 9e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 || |||||| || | |||||| | | |||||||| || || || || || ||| | | Sbjct 77066 CAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCA 77125 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 || || | || ||||| | ||||| || || | || || || || || || || || Sbjct 77126 GCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 77185 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| ||||| || || ||||| |||||||| || | ||| | || || || || | ||| Sbjct 77186 CTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGT 77245 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||||||||| | ||||| ||||| |||||| || Sbjct 77246 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTT 77285 >seq875 Length=1260434 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || |||||||| || | | | || ||||| ||||| Sbjct 610308 TGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTCCGTCCATCTTCCAGTTGC 610367 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | |||||||| | || || || | ||| ||||| || ||||||||| | || |||| Sbjct 610368 TGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTTCCTTACCCTGGATCTCG 610427 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || |||||| || | | | | ||||| ||||| Sbjct 610428 GCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGGCAACGGTCTTTCCTGTG 610487 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 610488 AGGGTCTTCACGAAAATCTGCAT 610510 >seq3107 Length=408548 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||||||||| | |||||||| || || || ||||| || || ||| Sbjct 376513 TGGTGGTACTTTGTATCTAAAGGAGTTGAATACTTGGACACAGTTTTTTTTATCCTAAGG 376454 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | |||||||||||||| | ||| |||||||| || Sbjct 376453 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 376394 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || || || |||| Sbjct 376393 TGGTGGATTGGAATTAAGTGGGTGGCTGGGGGGCAAG 376357 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||| ||||| ||| |||||||||| ||||||||||||||||| | || |||| Sbjct 374646 AAGCATTTTTTGGAGCGCAGCTGAATTCCTTTATCCATGTTATTATGTACTCCTACTATG 374587 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTA 60420 | | |||| | ||| || | || | |||||| | |||||||| || || Sbjct 374586 GGTTAACGGCATTTGGCCCATGGATTCAGAAGTATCTCTGGTGGAAACGGTA 374535 >seq2946 Length=659705 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||| | ||||| | || || | | ||||||||| ||||| | || || || ||| Sbjct 614325 TACCTTCCCTCAAGTGTAGGACCAGGGACAGAGTAGA--CTTTCCGGATGTTGTAGACAG 614268 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| || | ||| ||||||||||| | || |||| || ||| Sbjct 614267 ACGGGGTACATCCATCTTCCAGCTATTTCCCAGCAAAGATCAACCTCTGTTAGTCAGGAA 614208 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||| |||||||||| ||||| ||| | || || | ||||| | Sbjct 614207 GGATGCCTTCCTTCTCTTAGATCTTTGCTTCGACATTCTCAGTGGTGACAGTTGGTTCCA 614148 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | || | || | || |||| ||| | ||||| || |||||| Sbjct 614147 CTTTAAGTGTGACTGTTGTACCCATCAAGGTCATCACAAAGATTTGCATT 614098 >seq1059 Length=696884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || | | |||| || || |||||||| || || || || || ||| | | || | Sbjct 62028 GCAGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCAT 62087 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 | || || ||||| || ||||| || || | || || || | || ||||| | Sbjct 62088 CCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCGTG-------CCCTCCTTGT 62140 Query 82717 CTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG 82776 |||| || || ||||| |||||||| || | ||| | || || || || | | | || | Sbjct 62141 CTTGGATTTTGGCTTTGACATTTTCGATGGG-TCACTGGGCTCGACCTCGAGAATGATGG 62199 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| | ||||| ||||| |||| ||| Sbjct 62200 TCTTGCCTGTGAGGGTCTTCACAAAGATCTACAT 62233 >seq1852 Length=1880878 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| |||||||| || || ||| | || || || || Sbjct 1681075 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCGACCTCG 1681134 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 1681135 AGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1681178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981000791750266