Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2502 125 7e-24 seq3163 107 2e-18 seq1368 105 6e-18 seq2217 91.5 1e-13 seq3414 89.7 5e-13 seq350 89.7 5e-13 >seq2502 Length=682766 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || || ||| | || || ||||| || || Sbjct 412766 GTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCA-TCTTCCAGCTGTTTCCC 412708 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || ||||||||||||||||| ||||||| ||| Sbjct 412707 AGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 412648 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| || | ||||| |||||| || || | || Sbjct 412647 GACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCCGTTAAGGT 412588 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||| || |||||||| Sbjct 412587 TTTTACAAAGATCTGCAT 412570 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 414226 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 414168 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 414167 AGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 414108 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| || || || ||||| || Sbjct 414107 GACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTCCCCGTCAGGGT 414048 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 414047 CTTCACGAAGATCTGCAT 414030 >seq3163 Length=297541 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| | | | ||||| ||||||||||| Sbjct 214928 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCCTCCAGCTGCTTGCC 214986 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || ||||| || Sbjct 214987 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGGCTTT 215046 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| ||||| || | |||| ||| || || || || || Sbjct 215047 CACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGT 215106 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||| ||||| ||||| Sbjct 215107 TTTTACAAAAATTTGCAT 215124 >seq1368 Length=2199528 Score = 105 bits (116), Expect = 6e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| ||| | ||||| ||||||||||| Sbjct 788879 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCCTCCAGCTGCTTGCC 788821 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || ||||| || Sbjct 788820 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGCCTTT 788761 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| ||||| || | |||| ||| || || || | || Sbjct 788760 CACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTACGGT 788701 Query 133643 TTTTACGAAAATCTG 133657 |||||| ||||| || Sbjct 788700 TTTTACAAAAATTTG 788686 >seq2217 Length=590369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 |||||||||| || ||||| || | ||| | ||| | ||||| |||| || Sbjct 77092 ACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCCCCAGCTGTTTGCTGGCAA 77151 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAGC 133586 |||| || ||||||||||| || |||||||| |||||||| ||| ||| || |||| Sbjct 77152 AAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACA 77210 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | || | |||| ||||||| || |||| |||| ||| ||||| || || || || Sbjct 77211 TTTTCGATGATGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCTTC 77270 Query 133647 ACGAAAATCTGC 133658 || || |||||| Sbjct 77271 ACAAAGATCTGC 77282 >seq3414 Length=315879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | ||| | ||||| |||| |||| Sbjct 11366 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTATTTGCTG 11307 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || |||| || ||||||| ||| || |||||||| |||||||| ||| ||| || || Sbjct 11306 GCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTT 11248 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| |||||| || || | |||| ||| || || || || || Sbjct 11247 GACATTTTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTACCTGTGAGGGT 11188 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 11187 CTTCACAAAGATCTGCAT 11170 >seq350 Length=1614380 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | ||||||| |||||||| |||||| ||||||| || Sbjct 327656 TCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTA 327715 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| || | | ||| | || || |||| | ||| || || |||||| Sbjct 327716 TCCTGAATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCTCCACAGTGACG 327775 Query 133626 GTTTTGCCGGTCA-GAGTTTTTACGAAAATCTGCAT 133660 || | || || | | |||||||||||||| ||||| Sbjct 327776 GTCCTTCCTGTTAGGGGTTTTTACGAAAATTTGCAT 327811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483023826924560