Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4640 242 4e-59 seq322 109 6e-19 seq633 86.0 7e-12 >seq4640 Length=97181 Score = 242 bits (268), Expect = 4e-59 Identities = 616/933 (66%), Gaps = 13/933 (1%) Strand=Plus/Plus Query 162056 GCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTT 162115 || |||| | ||||| | || | ||| || | |||||||| || || | ||| | Sbjct 47558 GCTCCAGAGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATTGCAAAGAGGTCGACGT 47617 Query 162116 CCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCC 162175 || | || |||||||| || |||| || ||| || || ||||| || | |||| Sbjct 47618 CCACGTCAAACTTGTTGGCAAACAAATGGTGC---TTGCGCAGCATCCAGTTTAAGTCCC 47674 Query 162176 CCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCC 162235 || || || | |||||| || |||||||| | ||| ||||| || || || |||| | Sbjct 47675 CCACCCCAAAAATGCACACAGAACGCACGTGGATGCCACTGCAGGGTGGGTATGGGGCGC 47734 Query 162236 CATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGT 162295 | | | ||||| || |||||||| | ||| || || ||||| | | |||||||||| Sbjct 47735 CTTTGGAAACATCGCCTTCGTAGTAGTACCATTTGACAAACCTGGCAACTGCCTGCATGT 47794 Query 162296 CGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 | || |||| ||||| | || || | || ||||| || | || | || || | Sbjct 47795 CAGACATGTCATACTTATGGCTTGCGGGGAGTGCACCAGGGACTTCGGGGATCCTTTGAA 47854 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCC 162415 || ||||| || | ||| || || || || || || |||| ||| || || |||| Sbjct 47855 TGGTGGCCCAGAGATATTCATCGGGGCTGTAAGTGTCTTTCGCCCAGTCTATAAACTTTT 47914 Query 162416 TGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 || ||| || | ||| | |||| || ||| ||| | || | ||| || || | Sbjct 47915 GGATTTTTTCATTTTCTAGCACGTAACCTACATAGTCCCTACTGACCACAAAATAGGCAC 47974 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | || |||||||| ||||| | |||||| |||||||| || ||||| || Sbjct 47975 TGCCTGAAAACACAGGTATTTCCAGAGGAGGCCTTGCTTTGTCTGCCCCTGTGTTT-CTC 48033 Query 162536 CCATTCCC-TCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 ||||| || | || | || |||| ||||||| ||| | || | | || Sbjct 48034 AGTTTCCCATCAATGATTTCATGATGCTTCTTCCACCTT----TCTGCTTTGTGGGCTGG 48089 Query 162595 TGTT----CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 || | || || || ||||| |||| || | ||| |||| | || || || Sbjct 48090 CATTTTCTCAGTTTCAAGGCTGTTTTCACCCATTAATGACTTGAGCTTCCTGACAATTTC 48149 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 || || || |||| ||||| || | || ||||| || || | |||||||| || | Sbjct 48150 CAGGTTTGTTTTAATAGGAAAATCCATACCACAGAGGTTTATCAAGTATTTCCAGTTTGC 48209 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || | || || || |||| | ||||| || || |||||||| || ||||| || || Sbjct 48210 ACTCATTCTATAGAGCTCCTTCATGCAGTTGAGGTCTGCCTGGACCCGGCTCCATGAAGC 48269 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 || || || |||||| | |||| ||||||||||| |||||| || | || || Sbjct 48270 ATAGACCACATTCTCCAGCTGGCTGGCCACAAAGACATTACTGAAACAGGATGCAATGCC 48329 Query 162831 CATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||||| || | | || || | || || || || |||| ||| || | ||| Sbjct 48330 TATCACTGCGCCTAAAAAGGATTCCTCGGACTTTCTGTCCACATGTATGCAATAGAAATT 48389 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| ||||||||||||||| | || || | ||| || || || || || || || Sbjct 48390 CTGAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTAC 48449 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||||| || || || ||||| |||||||| Sbjct 48450 TATAGAATATGCAATCGGAAACTCTGCCTCCTC 48482 >seq322 Length=1596801 Score = 109 bits (120), Expect = 6e-19 Identities = 177/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 171512 CTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACT 171571 |||| ||| || ||||||||||| || | || ||||| |||| | || || |||||| Sbjct 146434 CTGAAGTCAGTCACAGTCCCCAAATGCAGCACCTTGCAGATCA---CTTCTTTCCCCACT 146378 Query 171572 TGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGT 171631 ||| | | ||| ||||| || || || | || || ||||| || || || || | ||| Sbjct 146377 TGAGTCTCAGGGTCTTTGACCTGTAGGACACTGGTGACAGACGTGGTTCCATTGGGGTGT 146318 Query 171632 AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGA 171691 || | | |||||| || || || || || || || || ||||| || || | |||| Sbjct 146317 GAGACAATCTCAGTACTGTTCTCAATCCCTGACCCAGCCACCTTCCAGAAGATCAAAGGA 146258 Query 171692 GCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGTGT 171751 ||||| | ||||| |||| ||| || || ||||| ||||| ||| | | |||| Sbjct 146257 GCTGGGCGGGCAGTGGCAGTGCAGGTGATATTTAAGTGGTCTTCAAAGTATTTGTAGTAA 146198 Query 171752 AATGACACAGTAGG 171765 | ||||| || || Sbjct 146197 AGGGACACTGTGGG 146184 >seq633 Length=2035718 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/333 (66%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 162063 GGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATC 162122 || ||||| || | |||||| |||| ||||||| ||| | || || || Sbjct 5337 GGCCTTATAGCGTAAATACTCTTCTAAGCACTGGAGAGCGCCGTCATCCACTTTTGGGTC 5396 Query 162123 GAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCC 162182 |||||||| || | ||||||||| ||||| | ||||| | || ||||| | ||| Sbjct 5397 AAACTTGTTGGCTAGCAGGTGATG---GTTCTGAAGCATCCAGTGCAGGTCCCCAGCTCC 5453 Query 162183 GAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTC 162242 | | || | |||| ||| || ||||| || | ||| ||||||| | Sbjct 5454 ATAAATACAAATTCCCCGCTGGTGGGTCCCACTGCAAGGTGCATAAGGGGCCCCGGCACT 5513 Query 162243 CACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGT 162302 ||||| ||||||| | |||||||| |||| ||||| || || || ||| ||| | Sbjct 5514 GACATCTCCCTCGTGGCCCTGCCACTTGACGAGCCTAGCAATGGCAGCCAAGTCTGAGAT 5573 Query 162303 GTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGC 162362 ||| |||||| | ||||||| ||||| | | || | ||| || || || Sbjct 5574 GTCATACTTGGGGTGGTAGGGCACGGAGCCAGGCATCCAGGGTGCACGCTGAAGTGTGGC 5633 Query 162363 CCACAGGTGTTCGTCTGGACTATACGTCTCCTT 162395 ||| ||||||||||| ||||| || || || || Sbjct 5634 CCAGAGGTGTTCGTCAGGACTGTAGGTGTCTTT 5666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577957006102400