Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq51 84.2 5e-11 >seq51 Length=3716683 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||| |||||| ||| || || || ||||| || || |||| |||||| || ||| Sbjct 836087 GTAGCCTTTGCTGCTGTAGAGGGGATTTTCTTCTCTGGATCTTTTGCTGCTATATTCTGG 836146 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||| | || | |||||||||||| | || |||||| || ||||| ||||| Sbjct 836147 CTAAAGAAGAGAGGTCTTATGCCTGGACTCACTTTCTCCAATGAACTCATCAGCCGAGAT 836206 Query 131984 GAAG 131987 |||| Sbjct 836207 GAAG 836210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185813854473934