Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2502 134 9e-27 seq3414 107 1e-18 seq3163 98.7 7e-16 seq2217 91.5 1e-13 seq1368 91.5 1e-13 seq1059 84.2 1e-11 >seq2502 Length=682766 Score = 134 bits (148), Expect = 9e-27 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||||| || |||||| ||||| || |||||||| || || Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||||| || ||||| ||||| | |||||| || | || Sbjct 412736 AAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 412677 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | |||||| || | ||||| Sbjct 412676 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 412618 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct 412617 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATTGT 412567 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || |||||| ||||| || |||||||| || | Sbjct 414258 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 414199 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || |||||| | || |||| ||||| || ||||||||||| | |||||| || | | Sbjct 414198 ACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAG 414139 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | | || | || | |||||| || | || Sbjct 414138 GAATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCT 414080 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 414079 ACTTCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq3414 Length=315879 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| | |||||| |||||| || |||||||| || ||| Sbjct 11396 CCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 11337 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| | ||| | ||||||||||| |||||||| || | || Sbjct 11336 AGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGG 11277 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||||| | || |||| || | |||||| || | | || Sbjct 11276 ATGCCCTCCTTGTCTTGGATTTT-GGCTTTGACATTTTCGATGGTGTCACTGGGCTTGAC 11218 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || |||||||| | || || |||||||||||||| Sbjct 11217 CTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq3163 Length=297541 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | || | ||| ||||| ||| || || |||||||| || || Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||||| || ||| || ||||| ||| ||| ||| || || | |||||| Sbjct 215018 ATGCCTTCTTTATCCTGAATCTTGGCTTTCA-CATTCTCAATGGTATCACTGGGTTCCAC 215076 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||||| ||||||||||| || ||||| Sbjct 215077 CTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCAT 215124 >seq2217 Length=590369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 33525 ACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAG 33584 ||| | || ||| | ||||| || || | | |||||| || |||||||| || ||||| Sbjct 77060 ACCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAG 77119 Query 33585 TGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCAC 33644 |||| | || ||| ||||| | ||||||||||| ||||||||| || | || | Sbjct 77120 AGTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGAT 77179 Query 33645 ACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGT 33703 || || ||||| ||||| | || |||| || | | |||| || | || || | Sbjct 77180 GCCCTCCTTGTCTTGGATTTT-GGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCT 77238 Query 33704 CAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 | | ||||| || || ||||| | || || |||||||||||| Sbjct 77239 CGAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 >seq1368 Length=2199528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| |||||| || |||||||| || || || ||||| | || |||| || Sbjct 788886 ATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTG 788827 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || ||||| || | | |||||| || | || | |||||||| || ||| || Sbjct 788826 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTT 788767 Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||||| ||| ||| ||| || || | |||||| || | ||||| || || |||| Sbjct 788766 GCCTTTCA-CATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTG 788708 Query 33725 TTAACGTTTTTACAAAGATCTG 33746 ||| ||||||||||| || || Sbjct 788707 TTACGGTTTTTACAAAAATTTG 788686 >seq1059 Length=696884 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 33550 AGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTT 33609 || ||| |||||| || |||||||| || ||||| ||||| | || |||| ||||| Sbjct 62042 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTG 62101 Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 ||||||||||||| ||||||||| || || || || ||||| ||||| | Sbjct 62102 CCGGCAAAAATCAGACGCTGCTGGTCGTG-------CCCTCCTTGTCTTGGATTTT-GGC 62153 Query 33670 TTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAAC 33729 || |||| || | ||| || | || || || | |||| || || ||||| | Sbjct 62154 TTTGACATTTTCGATGGGTCACTGGGCTCGACCTCGAGAATGATGGTCTTGCCTGTGAGG 62213 Query 33730 GTTTTTACAAAGATCTGCAT 33749 || || |||||||||| ||| Sbjct 62214 GTCTTCACAAAGATCTACAT 62233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328440824580480