Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1368 102 2e-16 seq875 84.2 5e-11 >seq1368 Length=2199528 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA--AT 206242 ||||| | |||||||| || |||||| |||| |||||| ||| || | || || Sbjct 788698 AAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGATACCATTGAGAAT 788757 Query 206243 CAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | || |||| |||||| || |||||||| || || ||| || || || |||| Sbjct 788758 GTGAAAGGCAA--GATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCT 788815 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || |||||| |||| ||||| | ||| | | || |||||| |||||||||||| Sbjct 788816 TTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGT 788875 Query 206363 CTACTCTTCACCTTGTT 206379 | ||||| || |||||| Sbjct 788876 CAACTCTGCATCTTGTT 788892 >seq875 Length=1260434 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || | | | | || ||| ||| ||||| | ||| Sbjct 610495 AAGACCCTCACAGGAAAGACCGTTGCCCTCAAGGTTGAACCTTCGGACACCATAGAAAAT 610436 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || | || ||||| ||| || || || || || | || Sbjct 610435 GTAAAGGCCGAGATCCAGGGTAAGGAAGGGATTCCTCCTGATTAGCAGAGGCTGCTGTTT 610376 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||| ||||||||||| |||| ||| | ||||| ||| | || || ||||| Sbjct 610375 GCTGGCCAGCAACTGGAAGATGGACGGACCTTGTCAGATTATAACATTCAAAAGGAGTCG 610316 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||||| || Sbjct 610315 ACTCTTCATCTTGTGTTGAGACTCCG 610290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180826056262174