Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq37683 104 7e-19 seq1338 104 7e-19 seq704 104 7e-19 seq2502 102 3e-18 seq1311 102 3e-18 seq1874 98.7 3e-17 seq154 98.7 3e-17 seq162 95.1 4e-16 seq1256 89.7 2e-14 seq32 78.8 3e-11 >seq37683 Length=3844 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 733 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 674 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 673 CCGGGTTTCGGC 662 >seq1338 Length=782664 Score = 104 bits (114), Expect = 7e-19 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 417201 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGGTT 417260 Query 2836 TCAGC 2840 || || Sbjct 417261 TCGGC 417265 Score = 104 bits (114), Expect = 7e-19 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || |||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||| Sbjct 478444 ATTGCTGAAATAGCTCAGCTGGGACAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 478503 Query 2826 ACCCCGGGCTTCAGC 2840 |||||||| ||| || Sbjct 478504 ACCCCGGGTTTCGGC 478518 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 198869 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 198928 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 198929 CCGGGTTTCGGC 198940 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||| | Sbjct 384729 TAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTT 384788 Query 2836 TCAGC 2840 || || Sbjct 384789 TCGGC 384793 >seq704 Length=1243311 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 578436 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 578377 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 578376 CCGGGTTTCGGC 578365 >seq2502 Length=682766 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 403072 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 403131 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 403132 TCCCGGGTTTCGGC 403145 >seq1311 Length=666915 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 205387 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 205328 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 205327 TCCCGGGTTTCGGC 205314 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 94288 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 94347 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 94348 CCGGGTTTCGGC 94359 >seq1874 Length=500210 Score = 98.7 bits (108), Expect = 3e-17 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | Sbjct 192381 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGTCCCTGGTTCGA 192440 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 192441 TCCCGGGTTTCGGC 192454 >seq154 Length=2207003 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 488198 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 488139 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 488138 CCGGGTTTCGGC 488127 >seq162 Length=1609319 Score = 95.1 bits (104), Expect = 4e-16 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | Sbjct 909121 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTT 909062 Query 2836 TC 2837 || Sbjct 909061 TC 909060 >seq1256 Length=1043927 Score = 89.7 bits (98), Expect = 2e-14 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 2778 GCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 292828 GCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCC 292777 >seq32 Length=2460406 Score = 78.8 bits (86), Expect = 3e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2780 TCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAG 2839 |||||||||||||| |||||||||||||||||||||| ||| |||| ||| || ||||| Sbjct 611026 TCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTGTGGATCAATCCCAGGTTTCAG 610967 Query 2840 C 2840 | Sbjct 610966 C 610966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15838211616630