Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq322 233 2e-56 seq2239 158 1e-33 seq2054 127 2e-24 seq2804 104 3e-17 >seq322 Length=1596801 Score = 233 bits (258), Expect = 2e-56 Identities = 243/319 (76%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||| ||||||||||| || | |||||||||||| | || ||| | | ||||| || Sbjct 143405 GTGGCAACCCAGGATGAAAGAGAGCTGCTGAACACATCTGCTTCCTTAAGGTGCTCTGTG 143464 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 |||||| |||||| | ||| || || ||||||||||| ||| |||| | ||||| Sbjct 143465 CAGACTGACCAGGAGATCTTGACGGTGACATGGCAGAAAATGAAGGCCACAAGCCCAGAA 143524 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | ||||| ||||||||| ||||| ||||| || ||| ||| || Sbjct 143525 AACATGGTCACCTACAGCAAGAGCCACGGGGTCGTGGTTCAGCCTGCCTATGAGGGCAGA 143584 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| || || || ||| |||||||||| | || || |||||||||||| | Sbjct 143585 GTAAACATCACACACCTGGGGCTCAGAAACTCAACCCTAACCTTCTGGAATACCACCCTG 143644 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| ||||| || |||| |||||||| || |||||||| |||||||| || | || Sbjct 143645 GAGGATGAGGGCTGTTACATGTGCCTCTTCAATACCTTTGGCTCTGGGAAGATTGCTGGA 143704 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 143705 AAAGCCTGCCTCACCCTCT 143723 >seq2239 Length=279090 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | || || | |||| |||||||||| | ||||||||| |||||||| Sbjct 219253 CTTCAGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 219194 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||||||||||||||| || |||||||||||||||||||| || ||||| || | Sbjct 219193 AGGTACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 219134 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 219133 CGCCACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 >seq2054 Length=1030836 Score = 127 bits (140), Expect = 2e-24 Identities = 127/167 (76%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| | |||||||| |||||||| |||||||| |||||||| |||||| ||||| Sbjct 304897 AGGGTTACCTCGGTTGCCAAGCCTTGTCGGAGATGATCAAGTTTTACCTGGAGGTGGTGA 304838 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| ||| | |||||||| || || | Sbjct 304837 TGCCACAGGCTGAGAACCAG------------GGCCCTGACGTCAAGGAGCACGTGAATT 304790 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||||||||| || |||||||| || | ||||||||| ||| Sbjct 304789 CCCTGGGGGAAAATCTGAAGACCCTCAGGAGCAAGCTGCGGCGCTGT 304743 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||| |||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| Sbjct 305240 CAAAAGAAGGATCAGCTGGACAACATGTTGTTAAATAAGTCCCTGCTGGAGGACTTGAAG 305181 Query 178233 G 178233 | Sbjct 305180 G 305180 >seq2804 Length=597395 Score = 104 bits (114), Expect = 3e-17 Identities = 208/308 (68%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 8597 TTATTTCCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGA 8656 || || ||| | |||||| ||||||||| | | || || | ||||| ||||||| Sbjct 160791 TTCTTCCCCCTTTGTACTCCCTGGTGTTTGTCATCGGCCTGGTGGGCAACATCCTGGTGG 160732 Query 8657 TCCTAGTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACC 8716 |||| ||||||| | ||||||||||||| | |||||||| ||| ||| |||||| Sbjct 160731 TCCTGATCCTCATGCAATACAAGAGGCTCAAAAGCATGACCAGTGTCTACCTCCTCAACC 160672 Query 8717 TGGCCCTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCG 8775 ||||| || ||| ||||| | | ||||| || ||||| ||||| ||| | ||| Sbjct 160671 TGGCCATTTCTGATCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATAGACTATAAACTGA 160612 Query 8776 GGGGGAACTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGC 8835 | | ||| |||| || | | |||||| || || | ||| ||| Sbjct 160611 GAGATAAC-------TGGGCTTTCGGCAATGCCATGTGCAAATTCCTCTCAGGCTTTTAT 160559 Query 8836 AACGTGGCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTT 8895 || | | |||||||||| || | || ||||||||| |||| | |||||||| || Sbjct 160558 TACATTGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACATTTGACAGGTACCTG 160499 Query 8896 GCAGTTGT 8903 || |||| Sbjct 160498 GCCATTGT 160491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583008854241600