Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2502 134 1e-26 seq3163 93.3 4e-14 >seq2502 Length=682766 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | |||||| || | || |||||||| || || ||||| Sbjct 412760 TCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAG 412701 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | || | || |||||||| ||||||| ||| | | | Sbjct 412700 ATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 412641 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| ||||||||||| || ||||| ||| Sbjct 412640 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACA 412581 Query 35726 AATATCTGCATTCTGTGCG 35744 || ||||||||| | |||| Sbjct 412580 AAGATCTGCATTGTCTGCG 412562 >seq3163 Length=297541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 214933 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 214992 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| ||||| |||| | | Sbjct 214993 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGGCTTTCACATT 215052 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||||||||||| ||||| || || || || | ||||| || Sbjct 215053 CTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTAC 215112 Query 35725 AAATATCTGCATTCTG 35740 ||| || |||||| || Sbjct 215113 AAAAATTTGCATTTTG 215128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450423419565520