Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2502 127 2e-24 seq3163 114 1e-20 seq1368 105 7e-18 seq3414 87.8 2e-12 seq2217 86.0 6e-12 >seq2502 Length=682766 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | || | ||| || |||||||| || || ||||||||||| | | Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 412736 AA-GGTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 412678 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || ||||| || ||| ||||| || | ||||| | ||||| Sbjct 412677 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 412618 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||||||||| ||||| ||||| || || || |||||| Sbjct 412617 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || ||||| || |||||||| || || ||||||||||| Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||||||||| | |||||| || || || Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | ||||| | || || Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACT 414077 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 414076 TCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq3163 Length=297541 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || || || || || || ||||| || ||||||||||| | Sbjct 214898 CCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAA 214957 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 214958 AGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 215017 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||| || || | || || | |||||| Sbjct 215018 ATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACC 215077 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| ||||| || || |||| ||||| || ||||||||||||||| Sbjct 215078 TCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTTG 215128 >seq1368 Length=2199528 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || || || || ||||||||||| || ||| || || || Sbjct 788891 ACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCC 788832 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||||||||| || | | |||||| || || || ||||||||||| || ||| Sbjct 788831 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGA 788772 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||| || || | || || | |||||| || ||||| ||||| || Sbjct 788771 ATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTT 788712 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || |||| ||||| || |||||||| ||||| Sbjct 788711 CCTGTTACGGTTTTTACAAAAATTTGTGTTTTG 788679 >seq3414 Length=315879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| |||| || ||||| || || || ||||||||||| | ||| Sbjct 11387 AGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAG 11328 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || |||| ||||| |||||||||| |||||||| || || || ||||| || Sbjct 11327 CCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCC 11268 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| |||||| || | ||||| | | || || ||||| Sbjct 11267 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACCTCAAGAGTG 11208 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || | || || || || || ||||| Sbjct 11207 ATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || | | | || || || ||||||||||| | ||| Sbjct 77067 AGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAG 77126 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || | |||||||||| |||||||||| ||||||||| || || || ||||| || Sbjct 77127 CCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 77186 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| |||||| || | |||| | || || |||||||| Sbjct 77187 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGTG 77246 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 ||||| || || || | || || || || || ||| ||| Sbjct 77247 ATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTTT 77286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504983379468880