Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1287 116 5e-21 seq58 114 2e-20 seq51 113 6e-20 >seq1287 Length=728452 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| | || || || | Sbjct 541987 CCTCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCT 541928 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | ||||| || ||||||||||||| |||||||| |||||||| | Sbjct 541927 TGAGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGG 541868 Query 39759 CAAC 39762 | || Sbjct 541867 CTAC 541864 >seq58 Length=3827145 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || || ||||| ||||| | || Sbjct 3738278 TGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATGGAC 3738219 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| |||||||||||||| ||||| ||||| || || | | |||||| Sbjct 3738218 TCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 3738159 Query 68839 TTTCTAAGACC 68849 ||||| | ||| Sbjct 3738158 TTTCTTACACC 3738148 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||||| Sbjct 3714407 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTA 3714348 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || || | Sbjct 3714347 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGT 3714288 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || |||| | ||||| || |||||||||| Sbjct 3714287 CCAGTTCCACAGTGGTGACCCCACTATACAAGCCTTGGATCACTTTCATGG 3714237 >seq51 Length=3716683 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||| || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 836208 TCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 836149 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| ||||||||||||||||| ||||| || || ||||| || ||||| || Sbjct 836148 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGGCT 836089 Query 39761 AC 39762 || Sbjct 836088 AC 836087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686344727666160