Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2239 100 2e-16 seq1287 98.7 8e-16 seq51 95.1 1e-14 >seq2239 Length=279090 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 ||||||| |||| || || ||| | || ||||| || || |||||||| ||||| Sbjct 219088 GATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGCGAATGGTGAGCTGTC 219147 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || || |||| || || ||||| |||||||| || ||||| || || ||||| || || Sbjct 219148 CTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTACCTTTCAACATTGCCAG 219207 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACA 41197 || || |||||||| | ||||||||||| Sbjct 219208 CTACGCCCTGCTCACCTGCATGATTGCACA 219237 >seq1287 Length=728452 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||| || | | ||||| || ||||| ||||| ||||| |||||| Sbjct 538341 CGGTTTAGCCAAGAAGTGCAGATCACGGAAGCTCGCTGTTTCTATGGCTTTCAGATTGCC 538400 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| ||||||||||| || || || || || ||||| |||||| Sbjct 538401 ATGGAAAACATACATTCTGAAATGTACAGCCTCCTTATTGACACTTACATTAAAGAT 538457 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||||| ||| ||||| | |||||||| || || ||||| | ||||| ||| Sbjct 541864 GTAGCCTTTGCAGCTGTAGAAGGAGTCTTCTTTTCTGGTTCCTTTGCATCGATATTCTGG 541923 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||||||||| ||||||||||| | || ||||| ||||| | || || | ||| Sbjct 541924 CTCAAGAAACGAGGATTGATGCCTGGCCTCACCTTTTCCAATGAACTGATTAGCAGAGAT 541983 Query 44255 GA 44256 || Sbjct 541984 GA 541985 >seq51 Length=3716683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||||||||| || ||||| |||||||| || || |||| Sbjct 849147 AAAATCCCTTTGATTTTATGGAAAATATTTCTTTAGAAGGGAAAACAAATTTCTTCGAAA 849206 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 849207 AACGAGTTTCAGAGTATCAGCG 849228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 827288 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 827347 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 827348 CATCCTTCTGGACAGCAGAAGAGGT 827372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397137778592470