Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2716 246 9e-60 seq6 246 9e-60 seq3 212 2e-49 seq3163 181 3e-40 seq875 181 3e-40 seq1368 170 6e-37 seq2502 132 1e-25 seq350 129 2e-24 seq692 123 8e-23 seq616 114 4e-20 seq2091 109 2e-18 seq1869 95.1 4e-14 >seq2716 Length=930914 Score = 246 bits (272), Expect = 9e-60 Identities = 756/1160 (65%), Gaps = 18/1160 (2%) Strand=Plus/Minus Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 |||||||| ||| | ||| || | || || ||||| || || ||||| | ||| Sbjct 424392 TATAAAGGAGAAAATAAAGCCTTCTATCCTGAGGAAATCTCTTCTATGGTGCTGACTAAG 424333 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| | |||||| || | ||| || | || || || ||||||| || || || Sbjct 424332 ATGAAGGAGACTGCTGAGGCTTTTTTGGGGCACACTGTTACCAATGCTGTGATCACAGTG 424273 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 ||||||||||| ||||| | || || || || || ||||| || ||||| || Sbjct 424272 CCAGCCTATTTCAATGACTCACAACGCCAGGCCACCAAGGATGCGGGTGTTATTGCAGGA 424213 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || |||||||| || ||||||||||| ||||| || ||||| || || | ||| Sbjct 424212 CTCAACGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCCTACGGTTTAGAT 424153 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 ||| || | ||| | | | || || |||||| ||||||| ||||| |||||| Sbjct 424152 AAAGGAGGTCATGGAGAGCGACACGTCCTGATCTTTGATCTAGGTGGAGGTACGTTTGAT 424093 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || | ||||| | || || || |||||||| || ||||| ||||| || || || Sbjct 424092 GTGTCCATTCTAACTATAGATGATGGTATTTTTGAGGTGAAAGCCACTGCCGGGGACACC 424033 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || ||||| || || ||||| || | | || || || || | || || ||| Sbjct 424032 CACCTGGGTGGGGAGGACTTTGACAACAGGTTGGTGAGCCACTTCGTGGAGGAGTTCAAG 423973 Query 349925 CGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGC 349983 | |||| || | || || | | || |||| || | | || | ||||| Sbjct 423972 AG-GAAGCACAAGAAGGACATCAGCCAGAACAAGCGAGCTGTGAGGAGGCTGCGCACTGC 423914 Query 349984 GTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTC 350043 || || | || ||| | || | ||||| | ||||| || | || || || || Sbjct 423913 CTGCGAGAGGGCCAAGAGGACCCTGTCATCCAGCACCCAGGCCAACCTGGAGATCGACTC 423854 Query 350044 TCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATG 350103 || ||| |||| || |||| | |||| ||||| | |||||||||||||| || || Sbjct 423853 CCTATTTGAGGGCATTGACTTCTATACATCCATTACCAGAGCTCGGTTTGAAGAGTTGTG 423794 Query 350104 TATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT 350163 | || | ||||| | || |||| |||||||| || | | ||||| || || Sbjct 423793 TGCAGACTTGTTTAGGGGTACCTTGGAGCCTGTGGAGAAGGCTCTGCGTGATGCTAAGAT 423734 Query 350164 GTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGT 350223 | ||| | | || |||| | ||||| || || || || || ||||| || || || Sbjct 423733 GGATAAAGCTAAAATCCATGACATTGTTTTGGTAGGGGGCTCCACCCGTATCCCCAAGGT 423674 Query 350224 TCAACAGTTACTATCT----GAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAAT 350278 |||| |||| || || | |||||||| || | | | ||| | || || Sbjct 423673 ---ACAGAGACTA-CTGCAGGACTACTTTAATGGTCGTGAGCTCAACAAGAGC-ATCAAC 423619 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAG 350338 || ||||| || || || ||||| ||||| || |||||| | ||||| || | ||| Sbjct 423618 CCTGATGAGGCAGTAGCCTATGGGGCTGCAGTACAGGCAGCGATTTTGATGGGTGACAAG 423559 Query 350339 AGTTCTAAAA---TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| ||| | | || || | | | || || |||| | || || || || Sbjct 423558 ---TCTGAAAAGGTACAGGACCTGCTTTTGTTGGACGTGGCTCCCTTGTCCCTAGGTTTG 423502 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 ||||| |||| | || |||||||| || || | ||| ||| | || || ||| Sbjct 423501 GAAACAGCTGGGGGCGTGATGACTGTCCTGATCAAACGTAATTCTACCATCCCCACCAAA 423442 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 || | || | ||| | || | ||||||| ||||| | ||| || || |||| | Sbjct 423441 CAGACACAGATCTTTACCACCTACTCAGATAACCAGCCTGGGGTCCTGATCCAGGTATAT 423382 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || ||||| | || || ||| || ||| || || ||| ||| | || | Sbjct 423381 GAGGGTGAGAGGGCCATGACCCGAGACAACAATTTGCTGGGGCGCTTTGACCTGACTGGA 423322 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || || || ||||||||||||||||| || |||| || || ||| | || Sbjct 423321 ATCCCTCCTGCACCCAGGGGAGTTCCTCAGATTGAGGTGACTTTTGACATCGATGCCAAC 423262 Query 350636 GGTATTTTAAATGTTACCGC 350655 || || | ||||| || || Sbjct 423261 GGCATCCTGAATGTCACGGC 423242 >seq6 Length=3379349 Score = 246 bits (272), Expect = 9e-60 Identities = 771/1172 (66%), Gaps = 49/1172 (4%) Strand=Plus/Minus Query 349276 TGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGAT 349335 |||||| || | | ||| || ||| | || ||||| ||||| || |||||||| |||| Sbjct 1366502 TGATCAGGGCAGCCCAACCACCCCAGC-TATGTTGCTTTTACTGATACTGAGCGATTGAT 1366444 Query 349336 TGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAA 349395 |||||| ||||||| ||||||| ||| ||||| | || || |||||| ||| || Sbjct 1366443 CGGTGATGCTGCAAAGAATCAAGTAGCTATGAATCCCACTAACACAGTTTTTTGTGCCAA 1366384 Query 349396 GCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCC 349455 ||| || |||| |||| ||| ||| | || ||| || | || |||| || Sbjct 1366383 GCGTCTGATTGAATGAAGGTTTGATGATGTTGTTGTCCAGTCTTATATGAAGCATTGGCC 1366324 Query 349456 TTTTACTGTTGTTCCAAAAGACGGTG-ATAAA---CCAATTATTG-AGGTTGAATATAAA 349510 || || || | || |||| | | |||| | || | || |||||||| Sbjct 1366323 TTCG--TGGTGGTG----AGT-GGTGCAGGCAGGCCCAA--AGTGCAAGTGGAATATAAC 1366273 Query 349511 GGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAG 349570 || ||| ||| || | || ||||| | ||||| ||||| | || |||||| Sbjct 1366272 GGAGAAACCAAAGGTTTCTGTCCAGAAGAGGTGTCATCTATGGTGCTGACAAAGATGAAG 1366213 Query 349571 GAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCC 349630 |||||||| ||||| || | || | || || || |||| || | ||||||||||| Sbjct 1366212 GAAATTGCAGAAGCCTACCTTGGAAAGACTGTCACCAGTGCTCTTGTCACTGTACCAGC- 1366154 Query 349631 TATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAAT 349690 |||| | |||||| || || | ||||| | | || ||| || | | | Sbjct 1366153 ------AATGCCTCTCAGCGTCAGGCTACCCAGGATGCAGCAACCACTGCTGGCCTCAGT 1366100 Query 349691 GTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG 349750 || || ||||| | || | || |||||||| || |||| ||||| | || |||| | Sbjct 1366099 GTACTGAGAATCTTCAACAAGCCAACTGCTGCTGCTATTGATTATGGCGTAGACAAAAAG 1366040 Query 349751 AGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCA 349810 || |||| |||| | || || ||||||||| | ||||| ||||| ||||| ||| Sbjct 1366039 GTTGGTGCTGAAAGAAATGTGCTGATCTTTGATTTAAGAGGTGGCACTTTCGATGTGTCA 1365980 Query 349811 CTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTT 349870 | || || ||||||| ||||| ||||| || ||| | | ||||| ||||| || ||| Sbjct 1365979 ATCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCCGCAGCTGGAGATACCCA-CTT 1365921 Query 349871 GG-TGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCA 349929 | |||||||||||||||||| | | || |||||| || || || | ||| || Sbjct 1365920 GAATGGAGAAGATTTTGATAACAGAATGGTGAATCATTTTATTGCTGAGTTCAGGCG-CA 1365862 Query 349930 AGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATG--CGTCGCCTAAGAACTGCGTG 349986 ||| || | || || || || | ||| | || || ||| | ||||| || Sbjct 1365861 AGCGCAAGAAGGACATCACTGAGAA--CAAGACGACTGTTGGTTACCTCCGTACTGCTTG 1365804 Query 349987 TGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCT 350046 |||||||| || || | | || || | ||||| || || |||| ||||| ||||| Sbjct 1365803 TGAACGTGTAAAACGCACTCTGTCTTCCAGCACCCAGGCCACTGTTGAGATTGACTCTCT 1365744 Query 350047 TGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTAT 350106 ||| || | || |||| | | |||||||| || |||| | |||||||| || || Sbjct 1365743 CTATGAAGGAATCGACTTCTATACCTCTATTACCTGTACTCGATGTGAAGAAT--TGAAT 1365686 Query 350107 G--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG---TATTAAAAGATGCAAAA 350161 | || || || | || |||| | |||||| |||| | | | ||||| || Sbjct 1365685 GCTGACCTATTCCATGGCACCCTGGAACTTGTGGAGAAAGCCCTGTGGAGGGATGCCAAG 1365626 Query 350162 ATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAA 350221 | ||| || ||| || | | || | || ||||| ||||| | |||||| || Sbjct 1365625 CTAGACAAGTCTCGGATACATCACATTGTCCTGGTGGGTGGCTCTACCCATATTCCCAAG 1365566 Query 350222 GTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT---CTAGATCAATTAAT 350278 |||| || | || || || || || || |||||| || | ||| | |||| Sbjct 1365565 ATTCAGGAGCTGCTTCAGGATTTCTTCAACGGAAAAGAA--TTGAACAAGAGC-GTTAAC 1365509 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAG 350338 || ||||| ||||||| |||||||| ||| | |||||| | | || || ||| | || Sbjct 1365508 CCTGATGAGGCTGTTGGTTATGGTGCAGCTCTCCAGGCAGCCTTCTTTTCAGGAGACAA- 1365450 Query 350339 AGTTCTAAAA---TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| ||| || | || | | || ||| ||| || | ||||| ||||| | Sbjct 1365449 --ATCTGAAAATGTTCAAGACTTGCTGCTCTTAGGTGTCGCTTCTCTTTCACTTGGTATT 1365392 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 ||||| |||||| || |||||||| || || Sbjct 1365391 GAAACGGCTGGTGGTGTCATGACTGTCCTGAT 1365360 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 183648 AATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTA 183707 || |||| ||||||||| | | | ||| ||||||||||||| ||| || || ||| Sbjct 1365870 AACTCAGCAATAAAATGATTCACCATTCTGTTATCAAAATCTTCTCCATTCAAGTGGGTA 1365929 Query 183708 TCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCA 183767 || ||||| | | ||| || ||||| ||||| ||||||||| | | ||||| ||||| Sbjct 1365930 TCTCCAGCTGCGGATTTGACCTCAAAGATTCCATCTTCAATAGTGAGGATTGACACATCG 1365989 Query 183768 AATGTACCACCACCCAAATCAAA 183790 || || ||||| | |||||||| Sbjct 1365990 AAAGTGCCACCTCTTAAATCAAA 1366012 >seq3 Length=4708640 Score = 212 bits (234), Expect = 2e-49 Identities = 380/550 (69%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| |||| | || || |||||||| || ||||| ||||| ||||| ||| | || || Sbjct 2000271 GAAAGAAATGTGCTGATCTTTGATTTGGGAGGTGGCACTTTCGATGTGTCAATCCTCACT 2000330 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| ||||| ||||| || ||| | || ||||| ||||| || | ||||||||| Sbjct 2000331 ATTGAAGATGGAATCTTTGAGGTCAAATCCACAGCTGGAGATACCCACTTGGGTGGAGAA 2000390 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATT 349939 ||||||||||| | | || || ||| || || || ||||| || ||| | Sbjct 2000391 GATTTTGATAACAGGATGGTGAATCACTTTATTGCTGAGTTCAAGCGCAAACATAAGAAG 2000450 Query 349940 GATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAG 349999 || || || || || || | |||||||| | ||||| ||||||||||| || Sbjct 2000451 GACATCACTGAGAACAAGAGGGCTGTTCGTCGCCTCCGTACTGCTTGTGAACGTGCAAAA 2000510 Query 350000 CGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAA 350059 ||| | | || || | ||||| || ||| || ||||| ||||| ||| || | Sbjct 2000511 CGTACTCTGTCCTCCAGCACCCAGGCCAGTATCGAGATTGACTCTCTCTATGAAGGAATC 2000570 Query 350060 GATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTA 350117 || || | | | || ||||| |||||||| |||||||||| || ||| || || || Sbjct 2000571 GACTTTTATACCTCCATTACCCGTGCTCGATTTGAAGAAT--TGAATGCTGACCTCTTCC 2000628 Query 350118 GAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGA 350177 | | || |||| |||||||| |||| | | ||||| || | ||| ||||| Sbjct 2000629 GTGGCACTCTGGACCCTGTGGAGAAAGCCCTGAGGGATGCCAAGCTAGACAAGTCTCAGA 2000688 Query 350178 TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTAT 350237 | |||| | ||| | || || || ||||| |||||||| || |||| | | || Sbjct 2000689 TACATGACATTGTTCTCGTGGGCGGCTCTACCCGTATTCCTAAGATTCAGAAACTGCTTC 2000748 Query 350238 CTGAGTTTTTTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTG 350294 || || || ||||| |||||| || | ||| | ||||| || ||||| ||||||| Sbjct 2000749 AGGATTTCTTCAATGGAAAAGAA--TTGAACAAGAGC-ATTAACCCTGATGAGGCTGTTG 2000805 Query 350295 CATATGGTGC 350304 | |||||||| Sbjct 2000806 CTTATGGTGC 2000815 Score = 174 bits (192), Expect = 5e-38 Identities = 366/535 (68%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT-AATTCTTTGCCATTA 183320 |||||||||| |||||||| ||||| |||||||| | | | | |||||||| ||||| Sbjct 2000817 CTGCACCATAAGCAACAGCCTCATCAGGGTTAAT-GCTCTTGTTCAATTCTTTTCCATTG 2000759 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||||| ||| || ||||| || ||||| | || || || || || | || Sbjct 2000758 AAGAAATCCTGAA-GCAGTTTCTGAATCTTAGGAATACGGGTAGAGCCGCCCACGAGAAC 2000700 Query 183380 TACTTCATCGATATTA--CTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGG 183437 | |||| || | | ||| | ||| ||| | ||| | | |||| || |||||| Sbjct 2000699 AATGTCATGTATCTGAGACTTGT-CTAGCTTG-GCATCCCTCAGGGCTTTCTCCACAGGG 2000642 Query 183438 TCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGAT 183497 |||| ||| | || | || | || ||||| |||| || | || | || Sbjct 2000641 TCCAGAGTGCCACGGAAGAGGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAG 2000582 Query 183498 GaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGAT 183557 | | ||||||| || || | ||| | || ||||| || || | || || || Sbjct 2000581 GTATAAAAGTCGATTCCTTCATAGAGAGAGTCAATCTCGATACTGGCCTGGGTGCTGGAG 2000522 Query 183558 GATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGA--TCTTGGAT 183615 || | || | ||| || |||||||| || || | || ||||| | | ||||| | Sbjct 2000521 GACAGAGTACGTTTTGCACGTTCACAAGCAGTACGGAGGCGACGAACAGCCCTCTTG--T 2000464 Query 183616 TATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATC 183675 | || || || || | |||||||| | || || |||| |||||| || | | | | Sbjct 2000463 TCTCAGTGATGTCCTTCTTATGTTTGCGCTTGAACTCAGCAATAAAGTGATTCACCATCC 2000404 Query 183676 TTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATA 183735 | ||||||||||||| ||||| || || ||||| ||||| || | ||| || ||||| | Sbjct 2000403 TGTTATCAAAATCTTCTCCACCCAAGTGGGTATCTCCAGCTGTGGATTTGACCTCAAAGA 2000344 Query 183736 TTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 |||| ||||||||| | | ||||| ||||| || || ||||| ||||||||||| Sbjct 2000343 TTCCATCTTCAATAGTGAGGATTGACACATCGAAAGTGCCACCTCCCAAATCAAA 2000289 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| | ||||||||||| || |||||||| | |||||| || || || |||| Sbjct 2000027 ATGCTGTTGTCACTGTACCAGCGTACTTTAATGACTCTCAGCGTCAGGCTACCAAGGATG 2000086 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | |||||| || | ||||| || ||||| || ||||| || |||||||| || | Sbjct 2000087 CAGGAACCATTGCTGGCCTCAATGTACTGAGAATCATCAATGAGCCAACTGCTGCTGCTA 2000146 Query 349728 TTGCATATGGGCTTGATAAAA 349748 |||| ||||| || || |||| Sbjct 2000147 TTGCGTATGGCCTAGACAAAA 2000167 Score = 100 bits (110), Expect = 9e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || ||||||||||||||||| || ||| |||| || ||| || ||||| ||||| Sbjct 1999215 GTGGAGATAATTGCAAATGATCAGGGCAACCGAACCACCCCAAGCTATGTTGCTTTTACT 1999274 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || ||||| || |||| |||||| ||||||| ||||||| ||| ||||| | || Sbjct 1999275 GATACTGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTAGCTATGAATCCCACTAAC 1999334 Query 349379 ACGGTTTTTGATG 349391 || ||||||| || Sbjct 1999335 ACAGTTTTTGGTG 1999347 >seq3163 Length=297541 Score = 181 bits (200), Expect = 3e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| ||||| ||||| || || || || || ||||| | || || ||||| Sbjct 214913 AGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 214972 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| |||||||| || |||||||||||| Sbjct 214973 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 215032 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || ||||| ||||| ||||| | |||| ||||| || || || || | ||| Sbjct 215033 TGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 215092 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| ||||| |||||||||||||| |||||| Sbjct 215093 TTTCCTGTTAGGGTTTTTACAAAAATTTGCATT 215125 >seq875 Length=1260434 Score = 181 bits (200), Expect = 3e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | ||| | |||||||||||||| ||||| |||||||| |||||||| || Sbjct 610283 ACCACCACGGAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGA 610342 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| | |||||||| | || | |||| ||||||||| Sbjct 610343 CAAGGTCCGTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGG 610402 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| ||| |||| || | || |||||||| || || | || || |||||||| Sbjct 610403 AATCCCTTCCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAAC 610462 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | ||| |||||||| || || || || || ||||||||||| Sbjct 610463 CTTGAGGGCAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCAT 610510 >seq1368 Length=2199528 Score = 170 bits (188), Expect = 6e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| ||||| |||||||| || || || || ||||| | || || ||||| Sbjct 788894 AGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 788835 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| |||||||| || |||||||||||| Sbjct 788834 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 788775 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || |||| ||||| ||||| | |||| ||||| || || || || | ||| Sbjct 788774 TGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 788715 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 ||||| |||| |||||||||||||| || Sbjct 788714 TTTCCTGTTACGGTTTTTACAAAAATTTG 788686 >seq2502 Length=682766 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | || ||||| || ||||| || || || || ||||| || || || |||||| Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| | | ||||| ||||| || || ||||| || || Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || || || ||||| || | || Sbjct 412661 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || |||| ||||||||||| ||||||||| Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| || ||||| || || || || ||||| | || || |||||| Sbjct 414241 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 414182 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| |||||||| || | | ||||| ||||||||||| ||||| || || Sbjct 414181 TCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 414122 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || || |||||||| || | |||| Sbjct 414121 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 414062 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 414061 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq350 Length=1614380 Score = 129 bits (142), Expect = 2e-24 Identities = 159/214 (74%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| |||| || ||| | | || || || ||||| ||| | ||||| Sbjct 327603 AGAACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTCAGAG--TGT--GACCATCC 327658 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| |||||||| | |||||||||||| Sbjct 327659 TCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTATCC 327718 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || ||||| ||||| || || | |||| |||| || || | || || ||| Sbjct 327719 TGAATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCTCCACAGTGACGGTC 327778 Query 140706 TTTCCGGTTA-GTGTTTTTACAAAAATCTGCATT 140738 |||| |||| | |||||||| ||||| |||||| Sbjct 327779 CTTCCTGTTAGGGGTTTTTACGAAAATTTGCATT 327812 >seq692 Length=1962805 Score = 123 bits (136), Expect = 8e-23 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||||||| |||| | ||| ||| |||| || || ||||| || || || ||||||| Sbjct 1770754 ACAAGATGAGGAGTCGGCTCCTTTCGAATGTTGTAGTCAGACAAGGTACGTCCATCTTTC 1770813 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 ||| || ||||||||||| | ||| ||||| ||| |||||| | |||||||| Sbjct 1770814 AGTCACTTGCCAGCAAAGAT----CCCTGCAGATCAAGAGAAATTCCCCCCTTATCCTGG 1770869 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || ||||| |||| ||| ||| | | ||| || |||||| | || || | |||| Sbjct 1770870 ATCTTAGCCTTTAGATTTTCACTTGTATCTGAGCATTCAACCTTGAGAGTGATAATCTTC 1770929 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||| ||||||||||||||| |||| Sbjct 1770930 CCCATTAAGGTTTTTACAAAAATCCGCAT 1770958 >seq616 Length=803614 Score = 114 bits (126), Expect = 4e-20 Identities = 226/331 (68%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||| |||| |||||||| || || | || |||| || || |||||||| | ||| Sbjct 707457 AAAGTGAAAGAAATTGCAGATAACTACCTTGGAAAAACTGTTACCAATGCTGTTGTCACT 707398 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 ||| |||| || |||||||| | |||| | || || ||| ||||| | | |||||| Sbjct 707397 GTATCAGCTTACTTTAATGACTCTCAGCATCAGGCTACCAAA-ATGCTAGAACCATTGCT 707339 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 | | ||||| || ||| || ||||| | ||||||| | ||||| ||||| | Sbjct 707338 GTCCTCAATGTACTGAGATGCATCAATGAGTCAACTGCTGTCACTATTGCTTATGGCTTA 707279 Query 349742 GATAAAATGAGT--GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 || |||| || | | | ||| || | || | ||||||||||| |||| |||| Sbjct 707278 GACAAAAAAGGTTGGTGCTA-AAACTCATGTGCTGTTCTTTGATTTAGGAGGTGCCACTT 707220 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 || ||| |||| | || || ||||| | || || ||||| || | | || ||||| | Sbjct 707219 TTCATGCATCAATCCTCACTATTGAAAATGGCATCTTTGATGTCAGTTCTACAGCTGGAG 707160 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || ||||||||| | |||||| Sbjct 707159 ATGTCCACCTAGGTGGAGAAACCTGTGATAA 707129 >seq2091 Length=1438649 Score = 109 bits (120), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||| |||||||| || ||||| ||||||||||| || ||| ||| | Sbjct 370819 CAGCCTGGACAGCAGCACCATACGCTACAGCCTCATCTGGGTTTATGCCACGGGATGGCT 370878 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| ||||| ||| || | |||||||| ||||| |||| ||| || |||| Sbjct 370879 CTTTGCCATTGAAAAACTCTTTAACAAGCTGTTGAATCTTTGGGATTCGAGTAGAGCCAC 370938 Query 183370 CGACTAATACTACTTCATCGATAT--TACTTTTACTAATTTGTGAATCTTTTAAAACTTT 183427 | || | || | |||||| |||| |||| | | || | ||||| | || ||||| Sbjct 370939 CAACAAGAACAATTTCATCAATATCAGACTTCTTCAAA--TCAGAATCCTCCAATACTTT 370996 Query 183428 TTCAACAGGGTCCATAGT 183445 | ||||| | ||| || Sbjct 370997 CTGGACAGGCTTCATGGT 371014 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | ||| | |||||||| ||||| || || ||||| |||||||| | | Sbjct 370960 ATTGATGAAATTGTTCTTGTTGGTGGCTCTACTCGAATCCCAAAGATTCAACAGCTTGTT 370901 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||||||| ||||||||||| || || | || || |||||||| ||||| || Sbjct 370900 AAAGAGTTTTTCAATGGCAAAGAGCCATCCCGTGGCATAAACCCAGATGAGGCTGTAGCG 370841 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||| ||||| Sbjct 370840 TATGGTGCTGCTGTCCAGGC 370821 Score = 87.8 bits (96), Expect = 5e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| ||||||| ||||||||||| |||||||||||||| ||||| ||||||| Sbjct 371699 ATGCAGTTGTTACTGTGCCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACTAAAGATG 371640 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||| | ||||| || | ||||| | || || || ||||| || Sbjct 371639 CTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 371594 >seq1869 Length=1184572 Score = 95.1 bits (104), Expect = 4e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| |||||||| || || || || |||||||| ||||| || ||||||||||| Sbjct 472849 TTTTGAATGTTATAATCCGACAAGGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATC 472908 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 || | ||||||||||||||||| ||| Sbjct 472909 AGCCTCTGCTGATCAGGAGGAATCCCT 472935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513979003742282