Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5669 96.9 4e-15 seq477 95.1 1e-14 seq1287 86.0 7e-12 >seq5669 Length=122626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| ||||||| |||||||||||| ||||||||| || || || || ||||| Sbjct 89627 AGTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGGAGCCGAGTTCCAAATTG 89568 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| | | ||| | |||||| ||||||||||||||||| | || || Sbjct 89567 ACCAATAGGCTGGAGTAAGTTGATGTTGTTACTTCCCACAAAGTTTTGAGCTAGATTCAC 89508 Query 117424 AATCGT 117429 ||| || Sbjct 89507 AATAGT 89502 >seq477 Length=3642312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||||| | |||||||||||| ||||| || |||||||| Sbjct 445897 GTGAAGATGTATCGAGGACTGGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 445838 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | || || || || ||| |||||| ||||||||||||||||| | | Sbjct 445837 CCAATAGGCTGCAAAAGATTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 445778 Query 152149 ATCGT 152153 || || Sbjct 445777 ATGGT 445773 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 445897 GTGAAGATGTATCGAGGACTGGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 445838 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| || ||||| || ||| ||||||||| || |||||||| |||| | Sbjct 445837 CCAATAGGCTGCAAAAGATTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 445778 Query 117425 ATCGT 117429 || || Sbjct 445777 ATGGT 445773 >seq1287 Length=728452 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| |||| |||||| ||||| | ||||||||||| | ||| || ||||| Sbjct 541985 TCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCTTG 541926 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | ||||||||| ||||||| ||||| ||| |||||||| Sbjct 541925 AGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGGCT 541866 Query 74892 AC 74893 || Sbjct 541865 AC 541864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546766639901200