Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3414 152 6e-32 seq2502 150 2e-31 seq2217 150 2e-31 seq1059 122 1e-22 seq875 122 1e-22 seq336 114 1e-20 seq1852 89.7 6e-13 >seq3414 Length=315879 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||||||||||| || | || Sbjct 11170 ATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCAGT 11229 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || ||||| || ||||||||||| || || || ||| || Sbjct 11230 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAAG 11289 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| | || | || ||||||| | || || ||||||| || Sbjct 11290 CAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 11349 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| | || || ||||||| || ||||| Sbjct 11350 ATCCAGAAAGAGTCCACTCTGTACCTGGTGCTGCGTCTGCGTGGTGG 11396 >seq2502 Length=682766 Score = 150 bits (166), Expect = 2e-31 Identities = 184/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || ||||| || ||| | || Sbjct 414030 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGAGCCCAGT 414089 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| |||||| Sbjct 414090 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 414149 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||||||||| || || || || |||| || ||||| | ||||| || Sbjct 414150 CAGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 414209 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| || ||||||||||| || || ||| |||| ||| | || ||| |||| |||| Sbjct 414210 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG-CTT-GAGG-GGAGGTGTTT-AAGT 414265 Query 27646 TTTTCC 27651 |||||| Sbjct 414266 TTTTCC 414271 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || | || || || || || || |||||||| ||| | | Sbjct 412569 AATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAG 412628 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || || |||||||| || || || || ||||| Sbjct 412629 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 412688 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| || || || || |||| ||| ||| | | ||||| || Sbjct 412689 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAA 412748 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||||||||| || | || | ||||| | ||||| Sbjct 412749 CATCCAGAAAGAATCCACTCTGCACTTGGTTCTTCGTCTGAGAGGTGG 412796 >seq2217 Length=590369 Score = 150 bits (166), Expect = 2e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 || ||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | | Sbjct 77285 AACGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAG 77226 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | || || ||||| || ||||||||||| || || || ||||| Sbjct 77225 TGACATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 77166 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| | || || || | ||||| | || || ||||||| || Sbjct 77165 GCAGCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACAA 77106 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 |||| || || | | | || || || || ||||||| |||||| Sbjct 77105 CATCCAGAAAGAGTTCCCCCTGCACCTGGTGCTGCGTCTGCGCGGT 77060 >seq1059 Length=696884 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | |||||||| ||||| || || |||||||| || | ||| ||||| ||| | || Sbjct 62233 ATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCAGT 62174 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | |||| | || || ||||| || ||||||||||| | |||||| Sbjct 62173 GACC-CATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCAC-------GACCAG 62122 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || || || || ||||||| || || || ||||||| || Sbjct 62121 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 62062 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 |||| || || ||||| || | || || ||| ||| | |||| Sbjct 62061 ATCCAGAAAGAGTCCACCCTGCCCCTGGTGCTGCATCTGCATGGTG 62016 >seq875 Length=1260434 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || | || ||||||| | Sbjct 610510 ATGCAGATTTTCGTGAAGACCCTCACAGGAAAGACCGTTGCCCTCAAGGTTGAACCTTCG 610451 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| | || |||| ||||| || |||||||| || || Sbjct 610450 GACACCATAGAAAATGTAAAGGCCGAGATCCAGGGTAAGGAAGGGATTCCTCCTGATTAG 610391 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | |||||||| ||||||| || |||| || ||| | |||| ||||| Sbjct 610390 CAGAGGCTGCTGTTTGCTGGCCAGCAACTGGAAGATGGACGGACCTTGTCAGATTATAAC 610331 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||||||||| || ||| | || || ||||| Sbjct 610330 ATTCAAAAGGAGTCGACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 610284 >seq336 Length=3219352 Score = 114 bits (126), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| | ||| || || || ||||| || ||||| ||| | ||| | || Sbjct 1022660 ATGCAGATCTTTGTGA-GACCCTCACAGG-AAGACCATCACTCTGGAGTTCGAGCCCAGT 1022717 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||||||||| | || || ||||| || ||||||||||| || | || |||||| Sbjct 1022718 GATTCCATTGCAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCACCTGACCAG 1022777 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | |||||| |||||||| | | || || ||||||| | | || | ||||| | Sbjct 1022778 CGGCGTCTGATTTTTGCCAGCAGACAGCTGGAGGATGGCCACAGTCTCTCGGACTACAGC 1022837 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 |||| || | |||| | || || || || |||||||||||| Sbjct 1022838 ATCCAGAA--AGTCCAGCCCACACCTGGTGCTGTGTCTTCGCGGTG 1022881 >seq1852 Length=1880878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 1681178 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 1681119 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | |||| | || || ||||| || ||||||||||| Sbjct 1681118 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 1681075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569842075357280