Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4640 98.7 1e-15 seq633 95.1 2e-14 >seq4640 Length=97181 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| ||||||||||| || | || ||||||||| | || || || || | ||| Sbjct 47891 GACACTTACAGCCCCGATGAATATCTCTGGGCCACCATTCAAAGGATCCCCGA-AGTCCC 47833 Query 14337 GGGGGGA-TCCCCGTTCACGTCA--AGTACGACACCTCGGACATGTGGGCCAAGGTCAGG 14393 || | | |||||| || | || |||| |||| || |||||| ||| | |||| Sbjct 47832 TGGTGCACTCCCCG--CAAGCCATAAGTATGACATGTCTGACATGCAGGCAGTTGCCAGG 47775 Query 14394 TTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGC 14453 || ||||| ||| |||||||||| || ||| | ||||| |||| ||||| || ||| Sbjct 47774 TTTGTCAAATGGTACTACTACGAAGGCGATGTTTCCAAAGGCGCCCCATACCCACCCTGC 47715 Query 14454 GACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAG 14513 ||||||||||| | | | ||||| || ||| || ||| | || ||| || | Sbjct 47714 AGTGGCATCCACGTGCGTTCTGTGTGCATTTTTGGGGTGGGGGACTTAAACTGGATGCTG 47655 Query 14514 AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 || | || |||| ||||||||||| |||| Sbjct 47654 CGCAAGCACCATTTGTTTGCCAACAAGTTTGACG 47621 >seq633 Length=2035718 Score = 95.1 bits (104), Expect = 2e-14 Identities = 243/368 (66%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || |||||| ||||||| | || || ||||| ||||| || || ||| ||||| | ||| Sbjct 6263 CCACTGAGCAAGGAAGAGTTAGACTTCCCCATAGCCTATTCCATGGTGGTCCACGAGAAG 6204 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || | || ||| | || ||| | || | || | ||| ||||| | || || ||| Sbjct 6203 ATTGAAAATTTTGAGAGGCTGCTGCGAGCGGTGTATGTCCCACAGAATATATATTGTGTC 6144 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 || ||||| |||||| || |||| || ||| ||| || ||| ||| Sbjct 6143 CATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCAATTGCCTCCTGC 6084 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || |||||| | |||| | |||||||| | |||||| | Sbjct 6083 TTCCCAAATGTCTTTCTGGCCAGCAAGCTGGTCCGGGTGGTGTATGCATCCTGGTCCAGG 6024 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 |||||||||||||| | ||||||| ||| || | |||||| |||| ||| Sbjct 6023 GTGCAGGCCGACCTGAACTGCATGGAAGACTTGCTCCAGAGCCCCGTGCCTTGGAAATAC 5964 Query 13971 CTGCTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 | || | |||||| |||| ||||| || | ||||| || ||||| || | || Sbjct 5963 TTCCTGAATACCTGT--GGGACAGACTTTCCTATAAAGACAAATGCTGAGATGGTCCAGG 5906 Query 14029 CGCTGAAG 14036 | || ||| Sbjct 5905 CTCTCAAG 5898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658198259837440