Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2502 122 8e-23 seq3163 113 4e-20 seq1368 91.5 1e-13 >seq2502 Length=682766 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| | || || || | || || ||||| ||||| || Sbjct 412570 ATGCAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 412629 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| || |||||||| |||||||| ||||| || || Sbjct 412630 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 412689 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || ||||| ||||||| || |||| | || || |||||| Sbjct 412690 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGACCTTGTCTGACTACAAC 412749 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | || |||||| | ||| || | ||||| || Sbjct 412750 ATCCAGAAAGAATCCACTCTGCACTTGGTTCTTCGTCTGAGAGGTGGGAT 412799 >seq3163 Length=297541 Score = 113 bits (124), Expect = 4e-20 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 26971 TTTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027 ||||||| || || | || |||| || ||||||||||| || || || ||| | || | Sbjct 215144 TTTTTAAATTTTAGGTCAAAATGCAAATTTTTGTAAAAACCCTAACAGGAAAGACCATCA 215085 Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087 |||| || |||||||| || | ||||||| || ||| || ||||| || |||| Sbjct 215084 CTCTGGAGGTGGAACCCAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAG 215025 Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 ||||||| || || || || ||| | | || | || ||||| || |||| || | Sbjct 215024 AAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCC 214965 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || |||| || |||||||| || |||||||| || | ||| | ||| | ||| || Sbjct 214964 GCACTCTTTCTGACTACAACATCCAGAAGGAGTCAACTCTGCATCTTGTTCTTCGTCTGA 214905 Query 27208 GGGGTGGC 27215 |||| ||| Sbjct 214904 GGGGCGGC 214897 >seq1368 Length=2199528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 || || ||||||||||| | || || ||| | || ||||| || |||||||| || Sbjct 788686 CAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGAT 788745 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||||| || ||| || ||||| || ||||||||||| || || || || ||| Sbjct 788746 ACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAG 788805 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | | || | || ||||| || |||| || || || |||| || |||||||| Sbjct 788806 AGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATC 788865 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || || ||||| || | ||| | ||| | || || ||| Sbjct 788866 CAGAAAGAGTCAACTCTGCATCTTGTTCTTTGTCTGAGGG 788905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434561255882880