Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2239 149 6e-31 >seq2239 Length=279090 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||| |||||| || || || ||||| |||| ||||| ||||| || |||||| Sbjct 219077 GACCTTCCTCAGATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGCGAAT 219136 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || ||||||||||| | ||||| || ||| Sbjct 219137 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTACCTTTC 219196 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || ||||| |||||||| | |||||| || ||| || Sbjct 219197 AACATTGCCAGCTACGCCCTGCTCACCTGCATGATTGCACATATC 219241 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||| | |||||||| ||||| || ||||||||||| || ||||| | Sbjct 219241 GATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGTACCCCCAG 219182 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | || || ||||||||||||||||| |||||||| || ||||| Sbjct 219181 GCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGCCACATAGAA 219122 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| |||| ||||| || || || |||||| |||| || || Sbjct 219121 CTGGCAAAGGGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGTC 219077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || |||| || || || || ||| |||||||||||||| ||| | | |||| Sbjct 215610 CCACCAATGCCAAAGAACTGTCTTCAAAGGGAGTGAAGATCTGGGATGCTAATGCATCTC 215669 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | || || || || || || ||||| || | Sbjct 215670 GAGACTTTTTGGACAGCCTGGGATTCTCTGCCCGAGAAGAAGGAGATTTAGGCCCAGTTT 215729 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 | || || |||||||| || ||||| || || ||| Sbjct 215730 ATGGCTTTCAGTGGAGGCATTTTGGTGCAGAATAT 215764 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || || ||||| || |||||||| || || || || ||||| || || || || || Sbjct 215764 ATATTCTGCACCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTTCTTC 215705 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | | ||| ||| | |||||| |||||||||||| | | ||| ||||||||||| Sbjct 215704 TCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATGCATTAGCATCCCAGATCTT 215645 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| || || || || |||| || |||| Sbjct 215644 CACTCCCTTTGAAGACAGTTCTTTGGCATTGGTGG 215610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447894298123680