Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq322 136 3e-27 seq3332 113 4e-20 >seq322 Length=1596801 Score = 136 bits (150), Expect = 3e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1293 GTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGAC 1352 || |||||||| ||| | || || |||||||||||||||||| ||| | || || | Sbjct 143489 GTGACATGGCAGAAAATGAAGGCCACAAGCCCAGAAAACATGGTCACCTACAGCAAGAGC 143548 Query 1353 CACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGACTA 1412 |||||||| || |||||||| || || | | | | | ||||| || | || || || Sbjct 143549 CACGGGGTCGTGGTTCAGCCTGCCTATGAGGGCAGAGTAAACATCACACACCTGGGGCTC 143608 Query 1413 CAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGT 1472 |||| |||| ||||||||||||| || || |||| ||||| || || |||| ||| Sbjct 143609 AGAAACTCAACCCTAACCTTCTGGAATACCACCCTGGAGGATGAGGGCTGTTACATGTGC 143668 Query 1473 TTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 | || || || ||||| ||||||||||| | |||| || || || ||||| Sbjct 143669 CTCTTCAATACCTTTGGCTCTGGGAAGATTGCTGGAAAAGCCTGCCTCACCCT 143721 >seq3332 Length=349265 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||||| ||||| || ||||||||| Sbjct 240355 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 240414 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 240415 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 240474 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 240475 ATCGCCCTCTGGATGACTGA 240494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414144950963416