Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2502 84.2 2e-11 >seq2502 Length=682766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| |||| |||||||| || ||||| |||| Sbjct 414123 GACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGGAAACAGCTGGAA 414182 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | |||| || ||||||||||| ||||| |||| |||| |||| || Sbjct 414183 GATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAATCCACTCTGCACCTGGTCCTG 414242 Query 28003 CGTTTGCGTGGCGG 28016 || ||| | || || Sbjct 414243 CGCTTGAGGGGAGG 414256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355577480326338