Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3163 172 1e-37 seq2502 167 5e-36 seq1368 163 7e-35 seq875 158 3e-33 seq3414 147 5e-30 seq2217 143 6e-29 seq1059 123 6e-23 seq350 114 3e-20 seq692 102 2e-16 seq1852 93.3 1e-13 seq1869 86.0 1e-11 >seq3163 Length=297541 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| ||||| || |||||||| || || | ||| || | ||||| Sbjct 214913 AGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 214972 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 214973 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 215032 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||| || || ||||| ||| | ||| ||||| |||||||| ||| Sbjct 215033 TGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 215092 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || |||||||| | |||||||| Sbjct 215093 TTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq2502 Length=682766 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| ||||| |||||||| || || | ||||| | ||||||| Sbjct 414241 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 414182 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || || || | | || ||||||||||||| ||||||||||| Sbjct 414181 TCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 414122 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || || || || ||||| ||| Sbjct 414121 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 414062 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 414061 TTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| ||||| |||||||| || || | | ||||| |||||| Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| | | || |||||||| || | ||||||||||| Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || || || |||||||||||| | || ||||| || ||||| || Sbjct 412661 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| | || |||||||| | ||||||| Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||||| | |||||| Sbjct 414013 AGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 413954 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG 211003 ||||||||||| || || ||||| | | || |||||||| Sbjct 413953 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGG 413913 >seq1368 Length=2199528 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| |||||||| |||||||| || || | ||| || | ||||| Sbjct 788894 AGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 788835 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 788834 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 788775 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||| || || ||||| ||| | ||| ||||| |||||||| ||| Sbjct 788774 TGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTC 788715 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || | || |||||||| Sbjct 788714 TTTCCTGTTACGGTTTTTACAAA 788692 >seq875 Length=1260434 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| |||||||| ||||| ||||| ||||||||||| | | ||| Sbjct 610289 ACGGAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGT 610348 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||||||| |||| ||| || || | || | || | |||||||||| || Sbjct 610349 CCGTCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCC 610408 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||| || || ||||| |||||||| || |||||||| ||| Sbjct 610409 TTCCTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAG 610468 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | |||||||| ||||| ||||| || || | |||||| || Sbjct 610469 GGCAACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCATCTT 610513 >seq3414 Length=315879 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||| |||||||||||||| |||||||| || || | || || | ||||| Sbjct 11381 AGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCC 11322 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||| |||| || || || || || || | |||||| || | || |||||||| Sbjct 11321 TCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCT 11262 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 ||||| || ||| || ||||||||||||||| | |||| ||||| |||||||| | Sbjct 11261 TGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTT--GACCTCAAGAGTGATGG 11204 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || ||||| ||||| ||||| | |||||| Sbjct 11203 TCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || | | ||||||| |||||||| || || | || || | ||||| Sbjct 77073 AGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCC 77132 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||| |||| || || || || || || |||||||| || | || |||||||| Sbjct 77133 CCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 77192 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || ||||||||| ||||| | || |||||||||||||| ||| Sbjct 77193 TGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGTGATGGTC 77252 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 || || ||||| ||||| ||||| | |||| ||| Sbjct 77253 TTGCCTGTGAGGGTCTTCACAAAGATCTGCGTTT 77286 >seq1059 Length=696884 Score = 123 bits (136), Expect = 6e-23 Identities = 155/212 (73%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||| | || ||||||||||| |||||||| || || | || || | ||||| Sbjct 62030 AGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCC 62089 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || || || ||||| | || |||||||| Sbjct 62090 TCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCGTG-------CCCTCCTTGTCT 62142 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || |||||||||| |||| | || ||||||||| |||| ||| Sbjct 62143 TGGATTTTGGCTTTGACATTTTCGATGG-GTCACTGGGCTCGACCTCGAGAATGATGGTC 62201 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | || ||| Sbjct 62202 TTGCCTGTGAGGGTCTTCACAAAGATCTACAT 62233 >seq350 Length=1614380 Score = 114 bits (126), Expect = 3e-20 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || |||| || ||| | ||||||| || || | || || ||||| Sbjct 327603 AGAACAAGATGCCGAGTCGAGTCTCTCCGGATGTTGTAGTCAG--AGTGTGA--CCATCC 327658 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| ||||| || ||| Sbjct 327659 TCCAGCTGCTTGCCTGCAAAGATGAGCCTGTGCTGGTCAGGAGGGGTGCCTTCTTTATCC 327718 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||| || |||||||| ||| | || ||||| | ||||| ||| Sbjct 327719 TGAATCTTGGCTTTCACATTCTCGATGGTATCACTGGGTTTCACCTCCACAGTGACGGTC 327778 Query 211083 TTTCCCGTGA-GAGTCTTTACAAACACCTGCATTTT 211117 |||| || | | || ||||| || | |||||||| Sbjct 327779 CTTCCTGTTAGGGGTTTTTACGAAAATTTGCATTTT 327814 >seq692 Length=1962805 Score = 102 bits (112), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||| |||| | ||| ||| | ||||| || || | | ||| | |||||||| | Sbjct 1770754 ACAAGATGAGGAGTCGGCTCCTTTCGAATGTTGTAGTCAGACAAGGTACGTCCATCTTTC 1770813 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || |||||| || ||||| | || | ||| ||| || ||| |||| |||||| Sbjct 1770814 AGTCACTTGCCAGCAAAGAT----CCCTGCAGATCAAGAGAAATTCCCCCCTTATCCTGG 1770869 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || | ||||| | || || |||| |||||||| ||||||||| |||| Sbjct 1770870 ATCTTAGCCTTTAGATTTTCACTTGTATCTGAGCATTCAACCTTGAGAGTGATAATCTTC 1770929 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| | | || |||||||| | | |||| || Sbjct 1770930 CCCATTAAGGTTTTTACAAAAATCCGCATGTT 1770961 >seq1852 Length=1880878 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| ||||| || ||| || ||||||||||||||| | || |||||| Sbjct 1681075 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCGACCTCG 1681134 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 1681135 AGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1681178 >seq1869 Length=1184572 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||||||||||| | ||||| |||||||||||| |||||||| || ||||| Sbjct 472849 TTTTGAATGTTATAATCCGACAAGGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATC 472908 Query 210987 AGGCGTTGTTGGTCAGGAGGAA 211008 || | || || |||||||||| Sbjct 472909 AGCCTCTGCTGATCAGGAGGAA 472930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158176336690310