Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2217 91.5 1e-13 seq3414 89.7 3e-13 seq1059 84.2 1e-11 >seq2217 Length=590369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||| |||||| || || || |||||||| || || || ||||||||||| || || ||| Sbjct 77286 AAACGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGCCCA 77227 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||| | |||| | ||| ||||| ||||| || || | || || || | Sbjct 77226 GTGACATCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 77167 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || |||||| ||||||| |||| || | ||||| | || |||| Sbjct 77166 AGCAGCGTCTGATTTTTGCCAGCAAACAGCTGGGGGATGGCTGCACTCTCTCAGACTACA 77107 Query 23789 ACATACAAAAAGAGT 23803 |||| || ||||||| Sbjct 77106 ACATCCAGAAAGAGT 77092 >seq3414 Length=315879 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || |||||||| || || | ||| Sbjct 11170 ATGCAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTCAAGCCCAGT 11229 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||| ||||| || || | || || || | Sbjct 11230 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAAG 11289 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||| ||||| | ||||| || | ||||| | || |||||| Sbjct 11290 CAGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 11349 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 11350 ATCCAGAAAGAGTCCAC 11366 >seq1059 Length=696884 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| || || || |||||||| || || || |||| |||||| || || ||| Sbjct 62233 ATGTAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCATTCTCGAGGTCGAGCCCAGT 62174 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | ||| | |||| | ||||| || || || |||| Sbjct 62173 GACCCATCGAAAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGC--ACGACCAG----- 62122 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||||||||| ||||| || | |||||| | || |||||| Sbjct 62121 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 62062 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 62061 ATCCAGAAAGAGTCCAC 62045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337738974092552