Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2502 150 4e-31 seq74 96.9 8e-15 seq3414 91.5 4e-13 seq2217 89.7 1e-12 >seq2502 Length=682766 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||||||||| |||| ||||| || | ||| || | |||||| Sbjct 412781 AGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCT 412722 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| |||||||| ||||| | | || ||||| || || || |||||||||||| Sbjct 412721 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 412662 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 412661 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 412602 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || ||||||| || | |||||| Sbjct 412601 TTACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||||||||| |||| ||||| || | || || | ||||| Sbjct 414242 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 414183 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| |||||||| || || | | || ||||| || ||||| ||||||||||| Sbjct 414182 TTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 414123 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || || || || | ||||| || Sbjct 414122 TTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 414063 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||| || || | ||| | ||||| Sbjct 414062 CTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 >seq74 Length=3723588 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || |||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 2156993 AATACCTGTCCGTCAGTAATGGAAATGACATTCGTTGGAATATAAGCAGACACATCACCA 2157052 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| ||||| | || || ||||||||| Sbjct 2157053 GCTTGTGTTTCTATGACGGGTAATGCTGTCAAGGAACCGCCACCAAAA 2157100 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 2157421 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 2157362 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | || |||||||| |||||||| || || ||| |||||| |||| Sbjct 2157361 GCAAGCATGCTTTGATCATCTATGACGACTTATCTAAACAGGTCAA 2157316 >seq3414 Length=315879 Score = 91.5 bits (100), Expect = 4e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||| |||||||| ||||| |||| ||||| || | | ||| Sbjct 11391 ACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGT 11332 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||| || | || || || || || || | ||| || || || || Sbjct 11331 GCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCC 11272 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||||| ||| |||| ||| |||||||||||| || | || || | Sbjct 11271 CTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTGACCTCAA 11213 Query 225671 ACGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 11212 GAGTGATGGTCTTACCTGT 11194 >seq2217 Length=590369 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || | | | ||||| |||| ||||| || | | ||| Sbjct 77064 CGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 77123 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| | ||||| || | || || || || || || ||||| || || || || Sbjct 77124 CAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCC 77183 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| ||| || || ||| ||||||| |||| || || || || | Sbjct 77184 TCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAG 77242 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 77243 AGTGATGGTCTTGCCTGT 77260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191527441271636