Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2239 136 3e-27 seq768 91.5 1e-13 >seq2239 Length=279090 Score = 136 bits (150), Expect = 3e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| || || |||||| | ||||| || | ||||||||| ||||| || || Sbjct 219249 AGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGT 219190 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGCT 29832 ||||| || |||||||| |||||||||||||| |||||||| || ||||| || |||| Sbjct 219189 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGC- 219131 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||| || ||||| || | ||||||||| ||||| || ||||| Sbjct 219130 CACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 >seq768 Length=1314110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | || ||| ||| |||||||||||| || || Sbjct 190572 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGA 190631 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 190632 ATGGAGAACCAGGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 190679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405838007210884