Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1287 104 2e-17 seq51 98.7 8e-16 >seq1287 Length=728452 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||||||||| || ||||| || | || ||||| || |||| || || Sbjct 541985 TCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCTTG 541926 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| | |||||||| || ||||| ||| Sbjct 541925 AGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGGCT 541866 Query 4692 AC 4693 || Sbjct 541865 AC 541864 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || ||||| ||||||||||||||||| ||||| || ||| Sbjct 538456 TCTTTAATGTAAGTGTCAATAAGGAGGCTGTACATTTCAGAATGTATGTTTTCCATGGCA 538397 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 |||||||| || || || || | |||||| || | || ||||| Sbjct 538396 ATCTGAAAGCCATAGAAACAGCGAGCTTCCGTGATCTGCACTTC 538353 >seq51 Length=3716683 Score = 98.7 bits (108), Expect = 8e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct 849225 TGATACTCTGAAACTCGTTTTTCGAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCC 849166 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 849165 ATAAAATCAAAGGGATT 849149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426707684606102