Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2239 127 2e-24 >seq2239 Length=279090 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| || || |||||| | ||||| || | ||||||||| ||||| || ||| Sbjct 219249 AGGCCCGTGATATGTGCAATCATGCAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGT 219190 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCGCT 27326 ||||| || |||||||| || ||||||||||| ||||| || || ||||| ||| |||| Sbjct 219189 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCGC- 219131 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || ||||| || | ||| ||||| ||||| || ||||| Sbjct 219130 CACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 219089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || | || ||||| || ||||||||||| || || || || || || || | | Sbjct 215774 TCATATCTTTATATTCTGCACCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 215715 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| ||||| | | ||| ||| ||||||||||||||| || | || || | Sbjct 215714 CTCCTTCTTCTCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGATGCATTAGCAT 215655 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| || || ||||||| || ||||| || Sbjct 215654 CCCAGATCTTCACTCCCTTTGAAGACAGTTCTTTGGCATTGGTGGATCC 215606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369211355676914