Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq58 114 2e-20 seq1287 102 1e-16 seq51 87.8 2e-12 >seq58 Length=3827145 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| | || Sbjct 3738278 TGAAATTCTCCTGACAAGACTCTGCGAGTGTATATGTTGCTCGTATACGGTTCAATGGAC 3738219 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||||||||||| |||||||| ||||| || || | | |||||| Sbjct 3738218 TCATTATTCCCCAGTATTTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 3738159 Query 77247 TTTCTGAGACC 77257 ||||| | ||| Sbjct 3738158 TTTCTTACACC 3738148 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || ||||| || || ||| Sbjct 3720542 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAGAGAAGGTTG 3720483 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || |||||| || ||||| || || | ||| | ||||||| Sbjct 3720482 TAGGTTTCAATAGCAGCATCGATGTCCTCTTTGTGAATCCCAACAGATACCCTCATCAAC 3720423 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 3720422 ATATGTTGCGGTCTTTCAGCC 3720402 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || |||| | ||| Sbjct 3727605 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAACAGGTCCCGGGCACGCTGT 3727546 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || ||||| ||||| || | ||| || ||||| | || || ||||||| || Sbjct 3727545 TCTTCCTTGCCTGTGTTCTTCTTTAAATCAAGGAACTCGAAGATGTCTAAATGCCAAGGC 3727486 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 3727485 TCCAGGTAAATAGCAAATGCCCCAGGTCG 3727457 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || ||||||||||||||||| ||| Sbjct 3728014 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGGCACATCAAAGAC 3727955 Query 77985 CAGTC 77989 ||||| Sbjct 3727954 CAGTC 3727950 >seq1287 Length=728452 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| | ||| ||||| ||| Sbjct 541985 TCATCTCTGCTAATCAGTTCATTGGAAAAGGTGAGGCCAGGCATCAATCCTCGTTTCTTG 541926 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || || || ||||||||||| | |||||||| || ||||| || Sbjct 541925 AGCCAGAATATCGATGCAAAGGAACCAGAAAAGAAGACTCCTTCTACAGCTGCAAAGGC 541867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | | ||||| |||||||| | Sbjct 543580 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCT 543521 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || ||||| | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 543520 CTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 543461 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 543460 CATAAAGTCAAATGGATT 543443 >seq51 Length=3716683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 ||||||||| || || | ||| || || || ||||| || ||||| || || | || | Sbjct 836210 CTTCATCTCGGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 836151 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||| ||||| || || ||||||||||| ||||| || || ||||| || ||||| | Sbjct 836150 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCCTCTACAGCAGCAAAGG 836091 Query 48283 C 48283 | Sbjct 836090 C 836090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694098355348160