Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2239 95.1 5e-15 >seq2239 Length=279090 Score = 95.1 bits (104), Expect = 5e-15 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || ||||||||||| | || | ||| |||||||| || | ||| |||| || Sbjct 219089 ATGGCACTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGCGAATGGTGAGCTGTCC 219148 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| |||| ||| |||| | |||||| | |||| || || || |||||||||||| Sbjct 219149 TGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTACCTTTCAACATTGCCAGC 219208 Query 52230 TATTCCTTGCTGAC--GCATCTGATTGC 52255 || || |||| || ||| ||||||| Sbjct 219209 TACGCCCTGCTCACCTGCA--TGATTGC 219234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189947703021340