Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2502 132 1e-25 seq3414 111 4e-19 seq2217 105 2e-17 seq3163 102 2e-16 seq1368 96.9 8e-15 seq875 95.1 3e-14 seq1059 86.0 1e-11 >seq2502 Length=682766 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| || ||||| ||||||||||| || | | || | |||||| Sbjct 414241 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 414182 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || || || | |||||||||||| | | || |||||||| ||| Sbjct 414181 TCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 414122 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| |||||||||||| || || Sbjct 414121 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATT 414065 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||||||||||| |||||| Sbjct 414064 GTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 127 bits (140), Expect = 5e-24 Identities = 157/212 (74%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || ||||| ||||||||||| || | || || | |||||||| | Sbjct 412776 CAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTCCGACCATCTTCCA 412718 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | |||||| || ||||| | |||||||||||| | | ||| |||||||| ||||| | Sbjct 412717 GCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGA 412658 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | ||| |||||| |||| | | |||| ||| ||| || ||||| || || |||| Sbjct 412657 TCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTTT 412601 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| | || || || |||| ||||||| Sbjct 412600 TACCCGTTAAGGTTTTTACAAAGATCTGCATT 412569 >seq3414 Length=315879 Score = 111 bits (122), Expect = 4e-19 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 ||||| |||||||| ||||||||||| || | | ||| | ||||| || || ||| Sbjct 11369 AGAGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTATTTG 11310 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 | ||| || || || | ||||| ||| | | ||| || ||||| ||||| ||||| | Sbjct 11309 CTGGCAAAAATCAGACGCTGCTTGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCT 11250 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||| ||| || || |||||||| || || || || ||| Sbjct 11249 TTGACATTTTCGATGGTGTC---ACTGGGCTTGACCTCAAGAGTGATGGTCTTACCTGTG 11193 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| |||||| Sbjct 11192 AGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151912 ACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGA 151971 ||||||| ||||||||||| || | | ||| | ||||| | || ||| | ||| | Sbjct 77092 ACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCCCCAGCTGTTTGCTGGCAA 77151 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 | || || | ||||||||| | | ||| || ||||| ||||| ||||| ||||||| Sbjct 77152 AAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACAT 77211 Query 152032 TCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCT 152088 | || | | |||| ||| ||| || || ||||| || || ||||| ||||| |||| Sbjct 77212 TTTCGATGATGTC---ACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTCT 77268 Query 152089 TCACGAAGACCTGCATTT 152106 |||| |||| |||| ||| Sbjct 77269 TCACAAAGATCTGCGTTT 77286 >seq3163 Length=297541 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| ||||| || ||||||||||| || | | ||| | ||||| Sbjct 214913 AGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCC 214972 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 214973 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 215032 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || ||| ||| |||| | | | || ||| || || || ||||| || Sbjct 215033 TGAATCTTGGCTTTCACATTCTCAATGGTATC---ACTGGGTTCCACCTCCAGAGTGATG 215089 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || || || | |||||||| Sbjct 215090 GTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq1368 Length=2199528 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| |||||||| ||||||||||| || | | ||| | ||||| Sbjct 788894 AGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 788835 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 788834 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 788775 Query 152013 TGAATTTTTTGTTTGACAGTCTC 152035 ||||| || ||| ||| |||| Sbjct 788774 TGAATCTTGCCTTTCACATTCTC 788752 >seq875 Length=1260434 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||||||||| ||||| ||||| ||||| ||||| | || || | Sbjct 610292 GAGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTCCG 610351 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || | || || || | |||||||||| || | | || ||||| Sbjct 610352 TCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTTC 610411 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| | || || | || ||| | |||| | |||| ||| || || | || | Sbjct 610412 CTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGGC 610471 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| ||||||||||| | |||||| || Sbjct 610472 AACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCATCTT 610513 >seq1059 Length=696884 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/203 (70%), Gaps = 14/203 (7%) Strand=Plus/Plus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 || || |||||||| ||||||||||| || | | ||| | ||||| || || ||| Sbjct 62042 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTG 62101 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||| || || || | ||||||||| | || ||||| ||||| ||||| | Sbjct 62102 CCGGCAAAAATCAGACGCTGCTGGTC-------GTGCCCTCCTTGTCTTGGATTTTGGCT 62154 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | ||| ||| ||| || || ||| | || || ||||| ||| Sbjct 62155 TTGACATTTTCGATG-GGTC---ACTGGGCTCGACCTCGAGAATGATGGTCTTGCCTGTG 62210 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| || ||| Sbjct 62211 AGGGTCTTCACAAAGATCTACAT 62233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152849623984674