Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2502 178 3e-39 seq3414 161 2e-34 seq2217 152 1e-31 seq1059 136 8e-27 seq3163 123 5e-23 seq1368 104 5e-17 seq2946 93.3 9e-14 seq336 93.3 9e-14 seq45559 89.7 1e-12 seq45557 89.7 1e-12 seq24551 89.7 1e-12 seq2978 89.7 1e-12 seq2916 89.7 1e-12 seq2724 89.7 1e-12 seq1852 89.7 1e-12 seq458 89.7 1e-12 seq342 89.7 1e-12 >seq2502 Length=682766 Score = 178 bits (196), Expect = 3e-39 Identities = 186/244 (76%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 282856 aaaaaaTAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTT 282915 ||||| | |||| ||| || | || ||| || ||||| || | ||| |||||| | Sbjct 414269 AAAAACTTAAAC----ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCT 414214 Query 282916 GGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAAC 282975 ||||||||||||||| || ||||| ||||| || || |||||||| ||||| ||||| | Sbjct 414213 GGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACC 414154 Query 282976 GTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAG 283035 || |||||| ||||| || ||||||||||||||||| || || ||| | ||||| | Sbjct 414153 TCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGG 414094 Query 283036 TGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 |||| | || ||||| || ||||| ||||| ||||||| ||||| ||||| |||| Sbjct 414093 TGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCT 414034 Query 283096 GCAT 283099 |||| Sbjct 414033 GCAT 414030 Score = 163 bits (180), Expect = 6e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||| | ||| ||||| |||| || | ||| |||||| |||||||||||||||| | Sbjct 412796 CCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 412737 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || || |||||||| ||||||||||| | || |||||| || Sbjct 412736 AAG-GTCCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 412678 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||||||||| || || | ||||| ||||| | || || Sbjct 412677 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 412618 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| || |||||||| || || || || || ||||||||| || Sbjct 412617 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCATTGTC 412566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 395575 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 395633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 403634 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 403692 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || ||||| || | ||| ||||| |||||||||||||||| Sbjct 414028 CCACCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 413969 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || || ||||| || || || ||||| ||||||||||| | || |||||| Sbjct 413968 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCA 413915 >seq3414 Length=315879 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| | | ||| ||||| |||||||||||||| | Sbjct 11396 CCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 11337 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| ||||||||| || | ||| | |||||| |||| ||| || | |||| || Sbjct 11336 AGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGTGGG 11277 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || ||||||||||||||||| || ||||| || | ||||| ||||| | |||| ||| Sbjct 11276 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTT-GAC 11218 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| || | ||||| || || |||||||| Sbjct 11217 CTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 ||| ||||| || || ||||| || | | | ||||| |||||||||||||| | || Sbjct 77060 ACCGCGCAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAG 77119 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 |||| ||||||| | || ||||| | |||||| |||| ||| || |||||| || || Sbjct 77120 AGTGCAGCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGAT 77179 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||||||||||||||||| || ||||| || | ||||| |||| | ||||| || Sbjct 77180 GCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTC 77239 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||||||| ||||| || || | ||||| || || |||||| ||| Sbjct 77240 GAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCGTTT 77286 >seq1059 Length=696884 Score = 136 bits (150), Expect = 8e-27 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 282874 CACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAA 282933 ||||| |||| | || ||||| | | ||| ||||| |||||||||||||| | | Sbjct 62016 CACCATGCAGATGCAGCACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGA 62075 Query 282934 GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAA 282993 | |||||||||||||| || ||||| |||||||| |||| ||| || ||||| Sbjct 62076 GAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTC-------G 62128 Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 | ||||||||||||||||| || ||||| || | ||||| | ||| | ||||| | Sbjct 62129 TGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGAT-GGGTCACTGGGCTCGACCT 62187 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||| ||||| || || | ||||| || || |||| ||| Sbjct 62188 CGAGAATGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTACAT 62233 >seq3163 Length=297541 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 282870 GAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929 || || || | ||| ||||| || ||||| | || || || ||||||||||||||| Sbjct 214895 GAGCCGCCCCTCAGACGAAGAACAAGATGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 214954 Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989 | ||| |||||||||||||| || || || || |||||||| | | || |||||| Sbjct 214955 GAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 215014 Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || || || || || ||||| ||||| || | || || || || | ||| Sbjct 215015 GGGATGCCTTCTTTATCCTGAATCTTGGCTTTCACATTCTCAATGGTATCACTGGGTTCC 215074 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || |||||||| ||||| || || | || || || || || |||||||| Sbjct 215075 ACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTACAAAAATTTGCATTTT 215127 >seq1368 Length=2199528 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 282881 CAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCG 282940 ||| | ||| || ||||| | || ||||| |||||||||||||||| ||| ||||| Sbjct 788901 CAGACAAAGAACAAGATGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCG 788842 Query 282941 GCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTC 283000 |||||||| || || || || |||||||| | | || |||||| || || || || Sbjct 788841 ACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTC 788782 Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 || || || ||||| |||| || | || || || || | ||| || || ||||| Sbjct 788781 TTTATCCTGAATCTTGCCTTTCACATTCTCAATGGTATCACTGGGTTCCACCTCCAGAGT 788722 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| ||||| || || | || || || || || || |||| Sbjct 788721 GATGGTCTTTCCTGTTACGGTTTTTACAAAAATTTGTGTTTT 788680 >seq2946 Length=659705 Score = 93.3 bits (102), Expect = 9e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| ||||||||||| ||| | || | ||||| || || | |||||| ||||||| Sbjct 614288 CTTTCCGGATGTTGTAGACAGACGGGGTACATCCATCTTCCAGCTATTTCCCAGCAAAGA 614229 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 |||| | |||| |||| | || || ||||| |||| ||||||||||| || | | Sbjct 614228 TCAACCTCTGTTAGTCAGGAAGGATGCCTTCCTTCTCTTAGATCTTTGCTTCGACATTCT 614169 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | | ||| | | | ||| |||| || |||| || ||||| |||| ||| | || | Sbjct 614168 CAGTGGTGACAGTTGGTTCCACTTTAAGTGTGACTGTTGTACCCATCAAGGTCATCACAA 614109 Query 283090 ATATCTGCATT 283100 | || |||||| Sbjct 614108 AGATTTGCATT 614098 >seq336 Length=3219352 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||| ||||||| | || || |||||||||| || ||| | | |||||| | Sbjct 1022847 CTTTCTGGATGCTGTAGTCCGAGAGACTGTGGCCATCCTCCAGCTGTCTGCTGGCAAAAA 1022788 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||| ||| | |||||| | || ||||||||||||||||| || ||||| || | Sbjct 1022787 TCAGACGCCGCTGGTCAGGTGAGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTG 1022728 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | || | || | |||| || |||||||| ||||| || || | ||| | || | Sbjct 1022727 CAATGGAATCACTGGGCTCGAACTCCAGAGTGATGGTCTT-CCTGTGAGGGTC-TCACAA 1022670 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 1022669 AGATCTGCAT 1022660 >seq45559 Length=905 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 453 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 395 >seq45557 Length=5458 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3953 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3895 >seq24551 Length=3908 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2246 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2304 >seq2978 Length=356400 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 177446 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 177388 >seq2916 Length=615105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 53919 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 53861 >seq2724 Length=624619 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 4897 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 4839 >seq1852 Length=1880878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||||||||||| | || ||||||||||||||||| ||||| |||||||| | Sbjct 1680758 CTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAAA 1680817 Query 282970 TCAAACGTTGTTGGTCA 282986 ||| ||| || |||||| Sbjct 1680818 TCAGACGCTGCTGGTCA 1680834 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||||||||| || ||||| || | ||||| ||||| | ||||| || Sbjct 1681074 ACCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCGACCTC 1681133 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| ||||| || || | ||||| || || |||||||| Sbjct 1681134 GAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1681178 >seq458 Length=1124590 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 101636 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 101694 >seq342 Length=1151481 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 713029 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 712971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045858155035876