Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2502 116 3e-21 seq875 109 4e-19 seq3163 107 1e-18 seq3414 91.5 1e-13 seq2217 89.7 4e-13 seq1368 89.7 4e-13 >seq2502 Length=682766 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || |||||||| || ||| || || ||||||||||| || | Sbjct 414256 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 414197 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||| ||||| ||||| ||||| | |||||| || | ||| Sbjct 414196 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGAGGA 414137 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| || ||||| ||| | |||| | |||||||| || || || Sbjct 414136 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATGGTGTCACTGGGCTCTAC 414078 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| ||||| ||||||||||||||||| ||||| Sbjct 414077 TTCAAGGGTGATTGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 414030 Score = 100 bits (110), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | | |||| ||| || ||| || || ||||||||||| || Sbjct 412800 CATCCCACCTCTCAGACGAAGAACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 412741 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||||||| ||||| ||||||||||| | |||||| || | Sbjct 412740 AGACAAGGTC-CGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAG 412682 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| || ||||| ||| | | ||| | |||||||| || Sbjct 412681 GTGGGATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGC 412623 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| | || || || || ||||| | ||| || || ||||| ||||| Sbjct 412622 TCCACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTTACAAAGATCTGCAT 412570 >seq875 Length=1260434 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCG 44178 ||||||||||| || ||||| || ||||||||| ||||| ||||| | | || | || Sbjct 610293 AGTCTCAACACAAGATGAAGAGTCGACTCCTTTTGAATGTTATAATCTGACAAGGTC-CG 610351 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||| |||| || ||||| | || | ||||| ||| | ||| | ||||| Sbjct 610352 TCCATCTTCCAGTTGCTGGCCAGCAAACAGCAGCCTCTGCTAATCAGGAGGAATCCCTTC 610411 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| || |||| ||| | || |||||||||| | | ||| |||| | | Sbjct 610412 CTTACCCTGGATCTCGGCCTTTACATTTTCTATGGTGTCCGAAGGTTCAACCTTGAGGGC 610471 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| ||||||||||||||||| || ||||| Sbjct 610472 AACGGTCTTTCCTGTGAGGGTCTTCACGAAAATCTGCAT 610510 >seq3163 Length=297541 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || ||| | || ||||||||||| || ||||| Sbjct 214933 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAA 214992 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | | |||||| || | ||| | ||||| || ||| ||||| |||| | | Sbjct 214993 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTT-GGCTTTCACAT 215051 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | ||||| || || ||||||||||| || || |||||||| || ||||| || | Sbjct 215052 TCTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTAGGGTTTTTA 215111 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 215112 CAAAAATTTGCAT 215124 >seq3414 Length=315879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 11399 ATGCCACCACGCAGACGCAGCACCAGGTACAGAGTGGACTCTTTCTGGATGTTGTAGTCT 11340 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| || | || ||||||| || | |||||| |||| |||||||| || | Sbjct 11339 GAGAGAGTGCAGCCATCCTCCAGCTATTTGCTGGCAAAAATCAGACGCTGCTTGTCAGGT 11280 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| || || || || | || | |||||||| || | Sbjct 11279 GGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTTG 11220 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || |||||||||||||| ||||| ||||| Sbjct 11219 ACCTCAAGAGTGATGGTCTTACCTGTGAGGGTCTTCACAAAGATCTGCAT 11170 >seq2217 Length=590369 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| || | | ||| || ||||||||||| || | ||| || Sbjct 77066 CAGACGCAGCACCAGGTGCAGGGGGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCA 77125 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||||| || | |||||| |||| ||||||||| || | || | || || Sbjct 77126 GCCATCCCCCAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 77185 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| || || || || | || | ||| |||| || || ||||| | || Sbjct 77186 CTTGTCTTGGATTTTGGCTTTGACATTTTCGATGATGTCACTGGGCTCGACCTCGAGAGT 77245 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || ||||| || |||||||||||||| ||||| ||| Sbjct 77246 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 77282 >seq1368 Length=2199528 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||||||||| || | || ||| | || ||||||||||| || ||||| Sbjct 788874 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTCCAGCTGCTTGCCTGCAAA 788815 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | | |||||| || | ||| | ||||| || ||| ||||| |||| | Sbjct 788814 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGAATCTTGCCTTTCACATT 788755 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || || ||||||||||| || || |||||||| || | ||| || || Sbjct 788754 CTCAATGGTATCACTGGGTTCCACCTCCAGAGTGATGGTCTTTCCTGTTACGGTTTTTAC 788695 Query 44326 GAAGATTTG 44334 || ||||| Sbjct 788694 AAAAATTTG 788686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359702175261198