Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq809 147 3e-30 seq1459 84.2 3e-11 >seq809 Length=1220577 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || || || |||| ||||| ||| |||||||||||| || ||||| || Sbjct 1199285 ATGAGCCTGGTTGTTTGAAACAACTGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGC 1199344 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||| ||||| ||||||| ||||| || |||||||||||||| || || || Sbjct 1199345 ACATCACACACTCTGTTATGTTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCTGGG 1199404 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || ||||| | || | || || || || | || || Sbjct 1199405 ACCAGACCAAAGACTTCCTGGCCCACAGCAAACCGTAGGTGCTCAGGGACGTGAGGTGGG 1199464 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| |||| | ||| ||||||| || || ||||| ||| Sbjct 1199465 TAGATCATCTCTGCCTGAGTATCTCTGACAGTGGGAGGATACACCTCTCCATCAATTATC 1199524 Query 9484 T 9484 | Sbjct 1199525 T 1199525 Score = 120 bits (132), Expect = 4e-22 Identities = 199/285 (70%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| ||||||||||| || |||| |||||||| | | || | |||| ||| Sbjct 1197422 GGACAGCCCTTGACGTTACTGCAGATCAGAGACTGGAGGGAGGCTGTGTTGATGATTTTA 1197481 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| ||||| || || ||||| ||||||||||| || || ||||| || Sbjct 1197482 AAACCCACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACAGATAGGATTG 1197541 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| ||||| | ||||| || || || | || | ||| ||||||| |||||| Sbjct 1197542 CCCAGGAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAGATG 1197601 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | ||||| |||||||| || | | | | ||||| |||| ||| || | ||| Sbjct 1197602 GAATCTGGACGAGGCTTTTCTACTAGAAGGGCAGGATACAGTTCCATAGCATCAATGTCA 1197661 Query 8543 CCGTAAAG-GGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || || || | || ||||| || || || |||||||| Sbjct 1197662 CCATAGAGCAGCTCT-AACTCTGCAGCCATTTCTTTCTCTCCTGT 1197705 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| |||| |||||| ||||| || || |||||| ||| ||| | || Sbjct 1200383 TCTTACCCCATGGCCCAATCCTTTTGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1200442 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || || |||| || |||||||| | || || ||||||||||| Sbjct 1200443 AAACTGATGAGTGAAGTGCTGTGCAAAGAACGCAAACATCAGATTTGTACCCTGGGGATC 1200502 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 1200503 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 1200540 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 10382 ACAATCTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTG 10441 |||| |||||| |||| || | | | | ||||| || || | |||||||| |||| Sbjct 1202222 ACAAACTTACGTGTTGAACAATTTTCGCCATAGAATCCTGTGCGAGTGCAATCACATTGA 1202281 Query 10442 TACTGATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAA 10501 ||||||| ||| || || ||||| || | |||| |||||||||||||| ||| |||||| Sbjct 1202282 TACTGATCGAATCCTACAGTCATACATACACCTCGGTTTTGACACGGATTGGAACAACAA 1202341 Query 10502 GGGTTGGCTAC 10512 || || ||||| Sbjct 1202342 GGATTTGCTAC 1202352 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | ||||| ||||| || ||||| || |||||||| || | ||| Sbjct 1201161 ACCTTTCACACCCATGGGAGTAGGACAGTCCTGAGGTACAGGAGGTAGGGCTCTGGTGTA 1201220 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||||| ||||| || |||||||||||| ||| |||||| | ||||| | || Sbjct 1201221 GTAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCGTAGTGAACATTGTAGGTTGG 1201280 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 ||||| |||| ||||| | ||| |||| Sbjct 1201281 GGGGCTATCAACCAAATGTGCTCTTGCTGA 1201310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 180/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000 ||||| || | ||| || ||||| | || || || || || | ||||| | ||||| Sbjct 1198593 ACACTCACCCTGCCAGCAATTTGCCTGGTAAATGACTCGACAAAGTGGGTGAGCCCGTGT 1198652 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATC 9060 || | ||| || ||||||||||| || | |||| |||| ||||||| Sbjct 1198653 TCCAGTAATATCGAGTTGTTGTAGACAAACTGTCGATAGTTGTACTCCTGGGCATCAATC 1198712 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | || || || ||||| |||| ||||||||| || | ||||||| || | | ||| Sbjct 1198713 TGAATTGTGTCAGGCATAAGAGGATGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAATA 1198772 Query 9121 CGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 || ||||||||||||||| ||| ||||| || || | |||| || || || Sbjct 1198773 CGGTTTTGGTACTGGAACTCTTGGTTAAAAAGCAGCTCTGGGTCAAACTTCAACTTGAAG 1198832 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| || | ||||| ||||| Sbjct 1198833 TGATAGCCACTCAAGTGCTGCACGTA 1198858 >seq1459 Length=688405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| || | || || || || |||||||||||||||||| | || || Sbjct 628291 TTGACAATGTTGAAACCAATCTCGCCACCAAAAGTGCTGGGCTTCCAGTACTCTGGAGAA 628350 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || | | ||| || ||||| || || |||||||| | || | || ||| Sbjct 628351 CAGATGGGATTTCCTAGGAGTCCCTTGAGAGAAAAAGGAGCCCCAATTTCTATCATACTC 628410 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG-TACAGCTCCAC 8529 || || ||||| | ||| || || ||| | || ||| | || | || | |||||| Sbjct 628411 TCTCCAAAGATTGAGTTTGGGTGGCACTTCT-CAAGAAGCAGCCCCAGATAGAACTCCAC 628469 Query 8530 AGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||| |||| || || || || | | || || || |||||||| |||||| Sbjct 628470 AGCATCGATATCACCATATAGCTCTTCCAACTCAGCTGCCATCTCCTTCTCTCCT 628524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716288118693760