Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3163 176 1e-38 seq1368 170 5e-37 seq2502 149 2e-30 seq875 127 5e-24 seq350 123 6e-23 seq3414 118 3e-21 >seq3163 Length=297541 Score = 176 bits (194), Expect = 1e-38 Identities = 172/221 (78%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| ||||||| || ||||| || |||||||| || ||||| || |||| Sbjct 215132 AGGTCAAAATGC---AAATTTTTGTAAAAACCCTAACAGGAAAGACCATCACTCTGGAGG 215076 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 ||||| | || ||||| ||||| || ||| ||||||||||| |||||||| |||| Sbjct 215075 TGGAACCCAGTGATACCATTGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCATCC 215016 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| |||||||| | || ||||| || || || ||||| || ||||| | |||||| Sbjct 215015 CTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCTTT 214956 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || || ||| |||| || || ||||| |||||||||||| Sbjct 214955 CTGACTACAACATCCAGAAGGAGTCAACTCTGCATCTTGTT 214915 >seq1368 Length=2199528 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | |||||||| || ||||| || ||||||||| | || Sbjct 788686 CAAATTTTTGTAAAAACCGTAACAGGAAAGACCATCACTCTGGAGGTGGAACCCAGTGAT 788745 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||||||||| |||||||| |||||||| |||||||| Sbjct 788746 ACCATTGAGAATGTGAAAGGCAAGATTCAGGATAAAGAAGGCATCCCTCCTGACCAGCAG 788805 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| || ||||| | |||||| | || || ||| || Sbjct 788806 AGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCTGACTACAACATC 788865 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| ||||| |||||||||||| Sbjct 788866 CAGAAAGAGTCAACTCTGCATCTTGTT 788892 >seq2502 Length=682766 Score = 149 bits (164), Expect = 2e-30 Identities = 163/211 (77%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| | || || ||||| |||||||| |||||||| || ||| Sbjct 412573 CAGATCTTTGTAAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGA--GCCCAGTG 412630 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| || ||||| ||||| ||||| || ||||||| Sbjct 412631 ACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 412690 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | | ||||| || || |||||||| |||||||| |||| |||| | || || ||| Sbjct 412691 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGGAC-CTTGTCTGACTACAAC 412749 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| |||||||| || ||||| |||| || Sbjct 412750 ATCCAGAAAGAATCCACTCTGCA-CTTGGTT 412779 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || || || || ||| Sbjct 414033 CAGATCTTCGTGAAGACCCTGACGGGGAAGACAATCACCCTTGAAGTAGA--GCCCAGTG 414090 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| ||||| || ||||| ||||||| Sbjct 414091 ACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGC 414150 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || |||||||| ||||||||| | || || | || || ||| Sbjct 414151 AGAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 414210 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 414211 TCCAGAAAGAATCCACTCTGCACCTGGT 414238 >seq875 Length=1260434 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||||||||| || | ||||| |||| ||| || ||| Sbjct 610507 CAGATTTTCGTGAAGACCCTCACAGGAAAGACCGTTGCCCTCAAGGTTGAACCTTCGGAC 610448 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||| |||| || ||||| || ||||| || |||| Sbjct 610447 ACCATAGAAAATGTAAAGGCCGAGATCCAGGGTAAGGAAGGGATTCCTCCTGATTAGCAG 610388 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | || | || || || | || || ||||||||| |||| |||| | ||||||||| | Sbjct 610387 AGGCTGCTGTTTGCTGGCCAGCAACTGGAAGATGGACGGAC-CTTGTCAGATTATAACAT 610329 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || |||||||| ||||||||| Sbjct 610328 TCAAAAGGAGTCGACTCTTCATCTTGTGTTGAGACTC 610292 >seq350 Length=1614380 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTC-TCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 ||||||| |||||||||| ||||| | | ||||||| || |||| | |||||| | Sbjct 327814 AAAATGC---AAATTTTCGTAAAAACCCCTAACAGGAAGGACCGTCACTGTGGAGGTGAA 327758 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 | | || ||||||||||| || ||| ||||||||||| |||||||| | |||||| Sbjct 327757 ACCCAGTGATACCATCGAGAATGTGAAAGCCAAGATTCAGGATAAAGAAGGCACCCCTCC 327698 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 |||||||| | || ||||| || || || ||||| || ||||| ||||| || Sbjct 327697 TGACCAGCACAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCACACTCT----GA 327642 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| ||| | ||| || || | |||||||||| Sbjct 327641 CTACAACATCCGGAGAGACTCGACTCGGCATCTTGTT 327605 >seq3414 Length=315879 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || |||||||| || || ||||| || ||||| |||| ||| Sbjct 11173 CAGATCTTTGTGAAGACCCTCACAGGTAAGACCATCACTCTTGAGGTC--AAGCCCAGTG 11230 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || |||||| || || || ||||| || || ||||| || ||| ||| Sbjct 11231 ACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACAAGC 11290 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || ||| | ||| |||| || ||||| | ||||| | || || ||| Sbjct 11291 AGCGTCTGATTTTTGCCAGCAAATAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACA 11350 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||| | || || Sbjct 11351 TCCAGAAAGAGTCCACTCTGTACCTGGT 11378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202718014182636