Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq87 163 3e-35
seq23 111 2e-19
>seq87
Length=11743621
Score = 163 bits (180), Expect = 3e-35
Identities = 548/839 (65%), Gaps = 22/839 (3%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| ||||| ||||||||| | || || | || ||||||||||| || ||||| |||||
Sbjct 8842176 TTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTT 8842235
Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
|| ||||| | || | | | |||||||| |||| ||| || |||||||
Sbjct 8842236 TCTACTCTGAATACCTTGTTAA--AACCCAGTTCCAGCATTAGTCTCTCTGCTACAACG- 8842292
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871
| || || || |||||| ||| ||||||| ||||| || | | || || |
Sbjct 8842293 CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAG 8842352
Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACTCGTTCCT 16928
| | | | ||||| ||| || | ||||||| | | |||| | ||
Sbjct 8842353 TAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTCTGCT 8842409
Query 16929 CGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCT 16988
| | ||| | ||| | ||||| ||| | || | || || || ||||| | ||
Sbjct 8842410 CCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCT 8842469
Query 16989 CGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTA 17048
| |||||||| || | ||| || ||| |||| | || ||||| |||||||||||| |
Sbjct 8842470 CATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGA 8842529
Query 17049 ACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC-- 17106
|| ||||| | || || || ||||||||||| || || || | | ||||| ||
Sbjct 8842530 GTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTA 8842589
Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166
|| | | | | | || || || ||||| | | ||||| | | |||| || ||
Sbjct 8842590 CATCACACTTAC--CATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGC 8842647
Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226
|| | ||||| ||| ||| | ||| ||||| || || | ||| ||||||
Sbjct 8842648 CTTCTTCTTTACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGA 8842706
Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286
|| | || || || || | || || |||||||||| || |||||||| ||||| ||
Sbjct 8842707 ATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGC 8842766
Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346
|| || || || || | || | |||||| | || ||||||| | ||||| |
Sbjct 8842767 AATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCAC 8842826
Query 17347 C-GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405
| || || ||||| |||| ||||| ||||| || || || || |||| | ||| | |
Sbjct 8842827 CAGCAAG-TTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG--TGA 8842883
Query 17406 TG--AAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATC 17463
|| |||||| |||| | || | || | ||||| || | || ||||| | |||
Sbjct 8842884 TGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATC 8842943
Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCAT 17522
|| || || | |||||||| || | | || || |||||||| | |||||||||||
Sbjct 8842944 CAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002
>seq23
Length=24341844
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| || |||||||| | ||| ||||| |||||||||||
Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || ||||||||||| || || || |||| |||||| |
Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162
Query 17106 C 17106
|
Sbjct 8996163 C 8996163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517504694489640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |