Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq87 163 3e-35 seq23 111 2e-19 >seq87 Length=11743621 Score = 163 bits (180), Expect = 3e-35 Identities = 548/839 (65%), Gaps = 22/839 (3%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| ||||||||| | || || | || ||||||||||| || ||||| ||||| Sbjct 8842176 TTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTT 8842235 Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 || ||||| | || | | | |||||||| |||| ||| || ||||||| Sbjct 8842236 TCTACTCTGAATACCTTGTTAA--AACCCAGTTCCAGCATTAGTCTCTCTGCTACAACG- 8842292 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || || |||||| ||| ||||||| ||||| || | | || || | Sbjct 8842293 CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAG 8842352 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA---ACTCGTTCCT 16928 | | | | ||||| ||| || | ||||||| | | |||| | || Sbjct 8842353 TAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTCTGCT 8842409 Query 16929 CGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCT 16988 | | ||| | ||| | ||||| ||| | || | || || || ||||| | || Sbjct 8842410 CCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCT 8842469 Query 16989 CGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTA 17048 | |||||||| || | ||| || ||| |||| | || ||||| |||||||||||| | Sbjct 8842470 CATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGA 8842529 Query 17049 ACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC-- 17106 || ||||| | || || || ||||||||||| || || || | | ||||| || Sbjct 8842530 GTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTA 8842589 Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 || | | | | | || || || ||||| | | ||||| | | |||| || || Sbjct 8842590 CATCACACTTAC--CATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGC 8842647 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226 || | ||||| ||| ||| | ||| ||||| || || | ||| |||||| Sbjct 8842648 CTTCTTCTTTACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGA 8842706 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || | || || || || | || || |||||||||| || |||||||| ||||| || Sbjct 8842707 ATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGC 8842766 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || || || || || | || | |||||| | || ||||||| | ||||| | Sbjct 8842767 AATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCAC 8842826 Query 17347 C-GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 | || || ||||| |||| ||||| ||||| || || || || |||| | ||| | | Sbjct 8842827 CAGCAAG-TTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG--TGA 8842883 Query 17406 TG--AAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATC 17463 || |||||| |||| | || | || | ||||| || | || ||||| | ||| Sbjct 8842884 TGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATC 8842943 Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCAT 17522 || || || | |||||||| || | | || || |||||||| | ||||||||||| Sbjct 8842944 CAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002 >seq23 Length=24341844 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | ||| ||||| ||||||||||| Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || |||| |||||| | Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162 Query 17106 C 17106 | Sbjct 8996163 C 8996163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517504694489640