Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq87 199 4e-46 seq23 111 2e-19 seq9 102 8e-17 >seq87 Length=11743621 Score = 199 bits (220), Expect = 4e-46 Identities = 550/833 (66%), Gaps = 10/833 (1%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || ||||||||||||||| | || || || ||||| |||||||| ||||| ||||| Sbjct 8842176 TTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTT 8842235 Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCT 16051 || |||| ||| | ||||||||| | || ||| |||||||||| | Sbjct 8842236 TCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACAACG-CA 8842294 Query 16052 ATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTT 16111 || || || |||||| |||||| |||| ||||| || | | || | || Sbjct 8842295 ATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAGTA 8842354 Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCG-TGTTTCAGA 16170 | | | | ||||||| ||| || | |||| || || | ||| || | || | Sbjct 8842355 AGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTGCTCCAAA 8842414 Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230 ||| | || | |||||| ||| || || | ||||| || |||| | || || Sbjct 8842415 -GGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATC 8842473 Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290 |||||| || | ||| |||||| | || | || |||||| |||||||||||| | || Sbjct 8842474 TCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCA 8842533 Query 16291 GAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGA-TTA 16349 |||||| | ||||| || || |||||||| || || || | | ||||| || | | Sbjct 8842534 GAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATC 8842593 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 | || | | || ||||| ||||| | | ||||| | | |||| || || || | Sbjct 8842594 ACACTTAC-CATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCT 8842652 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGA 16469 |||| |||| ||| | ||| ||||| || || | ||| |||||| ||| Sbjct 8842653 TCTTTACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTT 8842711 Query 16470 TTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529 | || || || ||| | || | | |||||||||| || |||||||| || || || || | Sbjct 8842712 TAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTT 8842771 Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCA 16589 | || ||||||| || | || || | || || |||| | |||||| || || Sbjct 8842772 GGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCACCAGCA 8842831 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAA 16647 ||| ||||||| || || || ||||| ||||| || ||| || ||||| | | || Sbjct 8842832 AGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGAT--GTAAA 8842889 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 |||| |||| | || | || | ||| | | | || ||||| | ||||| || Sbjct 8842890 ATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATCCAGCTC 8842949 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | ||||||||| || | | || || |||||||| | ||||||||||| Sbjct 8842950 CTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002 >seq23 Length=24341844 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | ||| |||||| |||||||||||| Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | |||||| || Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGC 8996163 >seq9 Length=34412642 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715 Query 16344 C 16344 | Sbjct 15801714 C 15801714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| |||||||| ||||| || ||||| || |||||||| || ||||||||||||||||| Sbjct 15817921 AACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 15817862 Query 15985 GGGATT 15990 |||||| Sbjct 15817861 GGGATT 15817856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511373979084360