Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq87 199 4e-46
seq23 111 2e-19
seq9 102 8e-17
>seq87
Length=11743621
Score = 199 bits (220), Expect = 4e-46
Identities = 550/833 (66%), Gaps = 10/833 (1%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| ||||||||||||||| | || || || ||||| |||||||| ||||| |||||
Sbjct 8842176 TTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTT 8842235
Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCT 16051
|| |||| ||| | ||||||||| | || ||| |||||||||| |
Sbjct 8842236 TCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACAACG-CA 8842294
Query 16052 ATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTT 16111
|| || || |||||| |||||| |||| ||||| || | | || | ||
Sbjct 8842295 ATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAGTA 8842354
Query 16112 AAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCG-TGTTTCAGA 16170
| | | | ||||||| ||| || | |||| || || | ||| || | || |
Sbjct 8842355 AGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTGCTCCAAA 8842414
Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230
||| | || | |||||| ||| || || | ||||| || |||| | || ||
Sbjct 8842415 -GGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATC 8842473
Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290
|||||| || | ||| |||||| | || | || |||||| |||||||||||| | ||
Sbjct 8842474 TCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCA 8842533
Query 16291 GAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGA-TTA 16349
|||||| | ||||| || || |||||||| || || || | | ||||| || | |
Sbjct 8842534 GAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATC 8842593
Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409
| || | | || ||||| ||||| | | ||||| | | |||| || || || |
Sbjct 8842594 ACACTTAC-CATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCT 8842652
Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGA 16469
|||| |||| ||| | ||| ||||| || || | ||| |||||| |||
Sbjct 8842653 TCTTTACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTT 8842711
Query 16470 TTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCT 16529
| || || || ||| | || | | |||||||||| || |||||||| || || || || |
Sbjct 8842712 TAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTT 8842771
Query 16530 GAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCA 16589
| || ||||||| || | || || | || || |||| | |||||| || ||
Sbjct 8842772 GGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCACCAGCA 8842831
Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAA 16647
||| ||||||| || || || ||||| ||||| || ||| || ||||| | | ||
Sbjct 8842832 AGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGAT--GTAAA 8842889
Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707
|||| |||| | || | || | ||| | | | || ||||| | ||||| ||
Sbjct 8842890 ATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATCCAGCTC 8842949
Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760
|| | ||||||||| || | | || || |||||||| | |||||||||||
Sbjct 8842950 CTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002
>seq23
Length=24341844
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | ||| |||||| ||||||||||||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||||| ||||| || || |||||||| || || || || | |||||| ||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGC 8996163
>seq9
Length=34412642
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||
Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715
Query 16344 C 16344
|
Sbjct 15801714 C 15801714
Score = 84.2 bits (92), Expect = 2e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984
||| |||||||| ||||| || ||||| || |||||||| || |||||||||||||||||
Sbjct 15817921 AACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 15817862
Query 15985 GGGATT 15990
||||||
Sbjct 15817861 GGGATT 15817856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511373979084360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |