Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq16 172 4e-38 seq4 149 5e-31 >seq16 Length=28134011 Score = 172 bits (190), Expect = 4e-38 Identities = 387/569 (68%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 18796 TTGGCCCCA-TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAA 18854 |||| |||| |||| ||||| ||||||||||||||||| || ||| ||||||| | | || Sbjct 9569520 TTGGGCCCAGTTTATGGCTTTCAGTGGAGACATTTTGGGGCAGAACATAAAGA-TATGAA 9569462 Query 18855 -TCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913 ||| | |||| | |||||| | || |||| ||||| ||||| | ||||| |||| Sbjct 9569461 TTCATATTATTCAGGCCAAGGAGTAGACCAGCAGCAAA--GTTATTGCCACAATCAAAAG 9569404 Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973 ||||| || || |||| || | | | |||||||||||| || | || | | Sbjct 9569403 CAACCCTGAGGATAGAAGAATCATCACGTGTTATTGGAATCCAAAAGACCTTCCTCTGAC 9569344 Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG 19033 ||| | ||||| || || | || |||| ||| | ||| |||| | ||||| Sbjct 9569343 GGTGATGCCTCCTTGCCAAGTCCTTTGCCAGTCCTACAT---GAACAGTGAGCTGTCCTG 9569287 Query 19034 CCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATA 19093 || || ||||||| || || || ||||||| |||||| || |||||||| || | | Sbjct 9569286 CC-AGCTTACCAGAAGTCAGGAGACATGGGCC-TGGGGTGCCTTTCAACATGGCCAGCT- 9569230 Query 19094 TGCA-CTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTC 19152 | || || || ||||||||| || | | | || || | || || || | | Sbjct 9569229 TCCACCTGCTCACCTACATAACCAAACACATAATGAGCCTGAAGCCAGGTGACTTTGTGC 9569170 Query 19153 ATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAG 19212 |||| |||| ||||||||||||||| ||||||| || || | | ||||| ||||| Sbjct 9569169 ATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCCCTGAAAGTTCAGCTCA 9569110 Query 19213 CTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAA---TGTAACAGATATAA 19269 ||||| |||| |||||| || || | ||| || |||| || |||| | Sbjct 9569109 CTCGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTGGAAAAACTGAGACAG---TTG 9569053 Query 19270 ACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAA 19329 | || || ||| || || |||||| |||| || ||||| || || | | |||| Sbjct 9569052 ATGATTTCAAAGCTGAAGACTTTCAGATTGAAAAGTACAATCCTCATCCAACTATTAAAA 9568993 Query 19330 TGGAAATGGCTCTTTAATGGATTTTTAAA 19358 ||||||||||| | | | |||||||| Sbjct 9568992 TGGAAATGGCTGTCTCCAGTGTTTTTAAA 9568964 >seq4 Length=36583390 Score = 149 bits (164), Expect = 5e-31 Identities = 369/547 (67%), Gaps = 11/547 (2%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA-CTGTCAATC 18856 ||||| |||| ||||| |||||||| ||||||| || ||||||||||| ||| | || Sbjct 19717887 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGAGGCAGAATATAAAGATCTG-AATTC 19717945 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 | | | || |||||| | || |||||||||| |||| || ||||| ||||| || Sbjct 19717946 AGATGGTGTAGGTCAAGGAGTAGACCAGCTGCAAAAGGTTACTGACACAATCAAAACCAA 19718005 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA-AAGGATATCCCCTTAATGG 18975 ||| || | | || |||| || || | ||| ||||||| |||| ||| | | || Sbjct 19718006 CCCTGACA-CAGAAGAATCATCATGTGCGCTTAGAATCCACAAGGCCTTCCTC-AGACGG 19718063 Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035 ||| |||| || || | | || ||||| | || | ||| |||| | |||||| Sbjct 19718064 CGCTAACTCCCTGCCATGCCCTTTGCCAGTTCTCTGTGGTGAACAGTGAGCTGACCTGCC 19718123 Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095 | | || ||||| || || | |||||||| |||||||| |||| |||||| | |||| Sbjct 19718124 AGCTGTAGCAGAGGTCAGGATACATGGGCCTGGGGGTACCTTTCACCATTGCCAGCTATG 19718183 Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA-TTTAATTCAT 19154 | | | |||||| ||| || || | | ||| || || | | || ||| | | || Sbjct 19718184 CCCAGTTCACCTAC--AGTCGCACACATCATAGGCCTGAAGCCACGTGACTTTGAAT-AT 19718240 Query 19155 ACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCT 19214 || |||| ||||||| ||||| | |||||| | || | | ||||| ||||| Sbjct 19718241 ACTTTGGGAGATGCACCTATTTTCCAGAATCACACTGAGCCCCTGAAAGTTCAGCTCCAG 19718300 Query 19215 CGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATAAACGA 19273 || |||| |||||| || || | ||| |||| | || ||| || | || Sbjct 19718301 AGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTCGGGAAGT-TGAGACAATTGATGA 19718359 Query 19274 CTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGA 19333 || ||| || || |||||| |||| || || ||||| | | | |||||||| Sbjct 19718360 ATTCAAAGTTGAAGACTTTCAGATTGAAGGGTACAATCCTCGTCTGATTGTTAAAATGGA 19718419 Query 19334 AATGGCT 19340 ||||||| Sbjct 19718420 AATGGCT 19718426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399473213597535