Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq16 172 4e-38
seq4 149 5e-31
>seq16
Length=28134011
Score = 172 bits (190), Expect = 4e-38
Identities = 387/569 (68%), Gaps = 18/569 (3%)
Strand=Plus/Minus
Query 18796 TTGGCCCCA-TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAA 18854
|||| |||| |||| ||||| ||||||||||||||||| || ||| ||||||| | | ||
Sbjct 9569520 TTGGGCCCAGTTTATGGCTTTCAGTGGAGACATTTTGGGGCAGAACATAAAGA-TATGAA 9569462
Query 18855 -TCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913
||| | |||| | |||||| | || |||| ||||| ||||| | ||||| ||||
Sbjct 9569461 TTCATATTATTCAGGCCAAGGAGTAGACCAGCAGCAAA--GTTATTGCCACAATCAAAAG 9569404
Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973
||||| || || |||| || | | | |||||||||||| || | || | |
Sbjct 9569403 CAACCCTGAGGATAGAAGAATCATCACGTGTTATTGGAATCCAAAAGACCTTCCTCTGAC 9569344
Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTG 19033
||| | ||||| || || | || |||| ||| | ||| |||| | |||||
Sbjct 9569343 GGTGATGCCTCCTTGCCAAGTCCTTTGCCAGTCCTACAT---GAACAGTGAGCTGTCCTG 9569287
Query 19034 CCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATA 19093
|| || ||||||| || || || ||||||| |||||| || |||||||| || | |
Sbjct 9569286 CC-AGCTTACCAGAAGTCAGGAGACATGGGCC-TGGGGTGCCTTTCAACATGGCCAGCT- 9569230
Query 19094 TGCA-CTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTC 19152
| || || || ||||||||| || | | | || || | || || || | |
Sbjct 9569229 TCCACCTGCTCACCTACATAACCAAACACATAATGAGCCTGAAGCCAGGTGACTTTGTGC 9569170
Query 19153 ATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAG 19212
|||| |||| ||||||||||||||| ||||||| || || | | ||||| |||||
Sbjct 9569169 ATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCCCTGAAAGTTCAGCTCA 9569110
Query 19213 CTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAA---TGTAACAGATATAA 19269
||||| |||| |||||| || || | ||| || |||| || |||| |
Sbjct 9569109 CTCGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTGGAAAAACTGAGACAG---TTG 9569053
Query 19270 ACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAA 19329
| || || ||| || || |||||| |||| || ||||| || || | | ||||
Sbjct 9569052 ATGATTTCAAAGCTGAAGACTTTCAGATTGAAAAGTACAATCCTCATCCAACTATTAAAA 9568993
Query 19330 TGGAAATGGCTCTTTAATGGATTTTTAAA 19358
||||||||||| | | | ||||||||
Sbjct 9568992 TGGAAATGGCTGTCTCCAGTGTTTTTAAA 9568964
>seq4
Length=36583390
Score = 149 bits (164), Expect = 5e-31
Identities = 369/547 (67%), Gaps = 11/547 (2%)
Strand=Plus/Plus
Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA-CTGTCAATC 18856
||||| |||| ||||| |||||||| ||||||| || ||||||||||| ||| | ||
Sbjct 19717887 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGAGGCAGAATATAAAGATCTG-AATTC 19717945
Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916
| | | || |||||| | || |||||||||| |||| || ||||| ||||| ||
Sbjct 19717946 AGATGGTGTAGGTCAAGGAGTAGACCAGCTGCAAAAGGTTACTGACACAATCAAAACCAA 19718005
Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA-AAGGATATCCCCTTAATGG 18975
||| || | | || |||| || || | ||| ||||||| |||| ||| | | ||
Sbjct 19718006 CCCTGACA-CAGAAGAATCATCATGTGCGCTTAGAATCCACAAGGCCTTCCTC-AGACGG 19718063
Query 18976 TACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCC 19035
||| |||| || || | | || ||||| | || | ||| |||| | ||||||
Sbjct 19718064 CGCTAACTCCCTGCCATGCCCTTTGCCAGTTCTCTGTGGTGAACAGTGAGCTGACCTGCC 19718123
Query 19036 AAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATG 19095
| | || ||||| || || | |||||||| |||||||| |||| |||||| | ||||
Sbjct 19718124 AGCTGTAGCAGAGGTCAGGATACATGGGCCTGGGGGTACCTTTCACCATTGCCAGCTATG 19718183
Query 19096 CACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA-TTTAATTCAT 19154
| | | |||||| ||| || || | | ||| || || | | || ||| | | ||
Sbjct 19718184 CCCAGTTCACCTAC--AGTCGCACACATCATAGGCCTGAAGCCACGTGACTTTGAAT-AT 19718240
Query 19155 ACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCT 19214
|| |||| ||||||| ||||| | |||||| | || | | ||||| |||||
Sbjct 19718241 ACTTTGGGAGATGCACCTATTTTCCAGAATCACACTGAGCCCCTGAAAGTTCAGCTCCAG 19718300
Query 19215 CGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TATAAACGA 19273
|| |||| |||||| || || | ||| |||| | || ||| || | ||
Sbjct 19718301 AGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTCGGGAAGT-TGAGACAATTGATGA 19718359
Query 19274 CTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATGGA 19333
|| ||| || || |||||| |||| || || ||||| | | | ||||||||
Sbjct 19718360 ATTCAAAGTTGAAGACTTTCAGATTGAAGGGTACAATCCTCGTCTGATTGTTAAAATGGA 19718419
Query 19334 AATGGCT 19340
|||||||
Sbjct 19718420 AATGGCT 19718426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399473213597535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |