Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq215 152 4e-32 seq4 129 4e-25 seq29 125 5e-24 seq16 118 8e-22 seq256 91.5 1e-13 >seq215 Length=4009963 Score = 152 bits (168), Expect = 4e-32 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 |||||||| || || ||||| || |||||||| ||||||||||| || || || || Sbjct 2912869 ATGGGAGTGACACACGTGCAACCCACAGTCACCAGCATCTTCTCCAGTCTGAAGGAGCGG 2912810 Query 27015 GGGCAGGGTTGATGC--CCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGT 27072 || ||| | | | ||||| | | || || |||||||| ||||| ||||| |||| Sbjct 2912809 GGACAGTGACCGTTCTCCCTTTTC--AGGACCAGGATCTCTTGCTGGATGGGGACGGAGT 2912752 Query 27073 TCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTT 27132 ||||||||| || || ||||| |||||||| ||||| || | |||||| ||||| || | Sbjct 2912751 TCATGTGGTGGTTCACCTTCCCCTCAGCATTGACACAGCCCAGGTAGCGGCACTTCGCCT 2912692 Query 27133 CCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 |||| ||||||||||| ||||| || | || || ||||| Sbjct 2912691 CCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 2912652 >seq4 Length=36583390 Score = 129 bits (142), Expect = 4e-25 Identities = 324/486 (67%), Gaps = 5/486 (1%) Strand=Plus/Minus Query 101785 ATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTG 101844 |||||| |||||| | || || || || | ||||| | |||| || || ||||| || Sbjct 19718182 ATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGCTG 19718123 Query 101845 ACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACA 101903 |||| |||| | | ||| ||| | || || | | |||| || || | | | Sbjct 19718122 GCAGGTCAGCTCACTGTTCACC-ACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGCG 19718064 Query 101904 CCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGT 101963 || | | ||||| | || |||| |||| ||||| | || ||||| | | ||||| Sbjct 19718063 CCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGTGTC-AGGGT 19718005 Query 101964 TTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGC 102023 | ||||| || || ||| | | || || | ||||| ||||||| ||| | ||| Sbjct 19718004 TGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATCTG 19717945 Query 102024 GCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAA 102083 | | ||||||||||||| | ||||||||||||||||| ||||| || || || Sbjct 19717944 AATTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTG 19717885 Query 102084 GATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCG 102143 ||||||||| |||| | | || || || | || ||||| || || ||| | | Sbjct 19717884 AATCTCCTTCTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCACTGG 19717825 Query 102144 CATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAA 102203 ||||||| || | ||| || | || || ||| | | || |||||| ||||| Sbjct 19717824 CATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGATAC 19717766 Query 102204 ACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA 102263 ||||| || ||||| ||||||||| | | ||| || | ||| || || | || |||| Sbjct 19717765 GCCACAGCAACTCTTCCACAACACCTGTGC-AAACACACGCTTGGTTGTCAGCAGAGGAA 19717707 Query 102264 ATTCAT 102269 | |||| Sbjct 19717706 ACTCAT 19717701 >seq29 Length=23005217 Score = 125 bits (138), Expect = 5e-24 Identities = 112/139 (81%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 4145 ATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTA 4204 |||||||||| || | | || || |||||||| ||||| | |||||| |||||||| | Sbjct 2179017 ATGGATAACTT-TACTTGCCTTGTAAACAGAACTGCCTCCTACTATCCAAACCATGTCCA 2178959 Query 4205 CTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA 4264 |||||||| | |||||||| ||||| |||||||||| |||||||| | ||| || || | Sbjct 2178958 CTTTATTTTCCAATTCTGGTTGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAA 2178899 Query 4265 AAAAATGAGCTCTATGTGG 4283 ||||||||||| ||||| Sbjct 2178898 GAAAATGAGCTCCTTGTGG 2178880 Score = 118 bits (130), Expect = 8e-22 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||||||| |||| ||||| | ||||||||||| Sbjct 2169106 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGG 2169047 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| ||||||||||||| |||||||||||| ||| Sbjct 2169046 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTG 2168997 Score = 105 bits (116), Expect = 5e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| |||||| |||||||||||||||||||||||||| | ||||||||| || ||| Sbjct 2185612 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCTTCCTGGACA 2185553 Query 4027 TTAGAAAGAACACTTGGATAT 4047 | ||||||||||| ||| ||| Sbjct 2185552 TCAGAAAGAACACCTGGGTAT 2185532 Score = 102 bits (112), Expect = 6e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| | ||||| ||| |||||||| ||||| | |||||| || ||||| Sbjct 2182253 AAGTTTATATTTCTTGAAATCAATTTCAGGAAAAAATGTGTCGCTTTCAAATTCCTGCAT 2182194 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||| |||||| |||||| || ||| | |||| ||||| || Sbjct 2182193 GATCCTTGTCACGAACAGTCTAAGATGGCCTGGGTGGTTCATGGCTTCCTT 2182143 >seq16 Length=28134011 Score = 118 bits (130), Expect = 8e-22 Identities = 371/562 (66%), Gaps = 17/562 (3%) Strand=Plus/Plus Query 101537 ACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTCATC 101595 |||||||| | ||||||||| | || || || || || ||||| ||| | || ||| || Sbjct 9568980 ACAGCCATTTCCATTTTAATAGTTGGATGAGGATTGTACTTTTC-AATCTGAAAGTCTTC 9569038 Query 101596 TGCTTTAAAGTCATCAA-TGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTC 101654 ||||| || ||||||| || | | || | || || || || | || || |||| Sbjct 9569039 AGCTTTGAAATCATCAACTGTCTCAGTTTTTCCAAG-AATGCTGAGCTTGGGGAAAGGTC 9569097 Query 101655 TAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCAT 101714 | || ||| || | ||| | ||| || | |||||||||| | || || || |||| Sbjct 9569098 TTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCAT 9569157 Query 101715 CTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAG 101774 |||| | |||||| | ||| || || ||| || | | | || | ||| | | Sbjct 9569158 CTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGG 9569217 Query 101775 TTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTT 101834 | | || |||| || ||||| || ||||| || | ||||| || |||| | | Sbjct 9569218 TGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGTCTCCTGACTTCT 9569276 Query 101835 GATACAGTTGACAGGAAAGCTTTCCATCACAGA-CATAAA--ATTGACTTAATACATGAC 101891 | || || || ||||| |||| ||| | ||| | | || | | || || | Sbjct 9569277 GGTA-AGCTGGCAGGACAGCT------CACTGTTCATGTAGGACTGGCAAAGGACTTGGC 9569329 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| |||| |||| | ||||| |||| ||||||| |||| | | || |||| Sbjct 9569330 AAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGATGATTCTTC 9569389 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 |||| |||||| |||| || || |||| |||| | | | |||| ||||||| | Sbjct 9569390 TATCCTCAGGGTTGCTTTTGATTGTGGCAAT-AACTTTGCTGCT-GGTCTACTCCTTGGC 9569447 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 || ||||| | | |||||| |||||| || ||||| ||||||||||| |||| Sbjct 9569448 CTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACTGAAAGCCAT 9569507 Query 102072 ACACAGGTCCAAGATCTCCTTC 102093 | || || || | |||| |||| Sbjct 9569508 AAACTGGGCCCAAATCTTCTTC 9569529 >seq256 Length=2651488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||||||||||||| || ||||||||||||||||| ||||| || || || | |||||||| Sbjct 775820 CTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTT 775761 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||| | || || || | || ||||| || ||| ||||| |||||||| | Sbjct 775760 CCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGA 775701 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 775700 TCTTCACTCC 775691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361223361418073