Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq215 152 4e-32
seq4 129 4e-25
seq29 125 5e-24
seq16 118 8e-22
seq256 91.5 1e-13
>seq215
Length=4009963
Score = 152 bits (168), Expect = 4e-32
Identities = 167/220 (76%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014
|||||||| || || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 2912869 ATGGGAGTGACACACGTGCAACCCACAGTCACCAGCATCTTCTCCAGTCTGAAGGAGCGG 2912810
Query 27015 GGGCAGGGTTGATGC--CCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGT 27072
|| ||| | | | ||||| | | || || |||||||| ||||| ||||| ||||
Sbjct 2912809 GGACAGTGACCGTTCTCCCTTTTC--AGGACCAGGATCTCTTGCTGGATGGGGACGGAGT 2912752
Query 27073 TCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTT 27132
||||||||| || || ||||| |||||||| ||||| || | |||||| ||||| || |
Sbjct 2912751 TCATGTGGTGGTTCACCTTCCCCTCAGCATTGACACAGCCCAGGTAGCGGCACTTCGCCT 2912692
Query 27133 CCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
|||| ||||||||||| ||||| || | || || |||||
Sbjct 2912691 CCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 2912652
>seq4
Length=36583390
Score = 129 bits (142), Expect = 4e-25
Identities = 324/486 (67%), Gaps = 5/486 (1%)
Strand=Plus/Minus
Query 101785 ATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTG 101844
|||||| |||||| | || || || || | ||||| | |||| || || ||||| ||
Sbjct 19718182 ATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGCTG 19718123
Query 101845 ACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACA 101903
|||| |||| | | ||| ||| | || || | | |||| || || | | |
Sbjct 19718122 GCAGGTCAGCTCACTGTTCACC-ACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGCG 19718064
Query 101904 CCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGT 101963
|| | | ||||| | || |||| |||| ||||| | || ||||| | | |||||
Sbjct 19718063 CCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGTGTC-AGGGT 19718005
Query 101964 TTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGC 102023
| ||||| || || ||| | | || || | ||||| ||||||| ||| | |||
Sbjct 19718004 TGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATCTG 19717945
Query 102024 GCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAA 102083
| | ||||||||||||| | ||||||||||||||||| ||||| || || ||
Sbjct 19717944 AATTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTG 19717885
Query 102084 GATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCG 102143
||||||||| |||| | | || || || | || ||||| || || ||| | |
Sbjct 19717884 AATCTCCTTCTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCACTGG 19717825
Query 102144 CATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAA 102203
||||||| || | ||| || | || || ||| | | || |||||| |||||
Sbjct 19717824 CATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGATAC 19717766
Query 102204 ACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA 102263
||||| || ||||| ||||||||| | | ||| || | ||| || || | || ||||
Sbjct 19717765 GCCACAGCAACTCTTCCACAACACCTGTGC-AAACACACGCTTGGTTGTCAGCAGAGGAA 19717707
Query 102264 ATTCAT 102269
| ||||
Sbjct 19717706 ACTCAT 19717701
>seq29
Length=23005217
Score = 125 bits (138), Expect = 5e-24
Identities = 112/139 (81%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 4145 ATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTA 4204
|||||||||| || | | || || |||||||| ||||| | |||||| |||||||| |
Sbjct 2179017 ATGGATAACTT-TACTTGCCTTGTAAACAGAACTGCCTCCTACTATCCAAACCATGTCCA 2178959
Query 4205 CTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA 4264
|||||||| | |||||||| ||||| |||||||||| |||||||| | ||| || || |
Sbjct 2178958 CTTTATTTTCCAATTCTGGTTGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAA 2178899
Query 4265 AAAAATGAGCTCTATGTGG 4283
||||||||||| |||||
Sbjct 2178898 GAAAATGAGCTCCTTGTGG 2178880
Score = 118 bits (130), Expect = 8e-22
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | ||||||||| |||| ||||| | |||||||||||
Sbjct 2169106 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGG 2169047
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| ||||| ||||||||||||| |||||||||||| |||
Sbjct 2169046 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTG 2168997
Score = 105 bits (116), Expect = 5e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026
||||||| |||||| |||||||||||||||||||||||||| | ||||||||| || |||
Sbjct 2185612 TATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCTTCCTGGACA 2185553
Query 4027 TTAGAAAGAACACTTGGATAT 4047
| ||||||||||| ||| |||
Sbjct 2185552 TCAGAAAGAACACCTGGGTAT 2185532
Score = 102 bits (112), Expect = 6e-17
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||||| | ||||| ||| |||||||| ||||| | |||||| || |||||
Sbjct 2182253 AAGTTTATATTTCTTGAAATCAATTTCAGGAAAAAATGTGTCGCTTTCAAATTCCTGCAT 2182194
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166
|||||| ||||| |||||| |||||| || ||| | |||| ||||| ||
Sbjct 2182193 GATCCTTGTCACGAACAGTCTAAGATGGCCTGGGTGGTTCATGGCTTCCTT 2182143
>seq16
Length=28134011
Score = 118 bits (130), Expect = 8e-22
Identities = 371/562 (66%), Gaps = 17/562 (3%)
Strand=Plus/Plus
Query 101537 ACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTCATC 101595
|||||||| | ||||||||| | || || || || || ||||| ||| | || ||| ||
Sbjct 9568980 ACAGCCATTTCCATTTTAATAGTTGGATGAGGATTGTACTTTTC-AATCTGAAAGTCTTC 9569038
Query 101596 TGCTTTAAAGTCATCAA-TGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTC 101654
||||| || ||||||| || | | || | || || || || | || || ||||
Sbjct 9569039 AGCTTTGAAATCATCAACTGTCTCAGTTTTTCCAAG-AATGCTGAGCTTGGGGAAAGGTC 9569097
Query 101655 TAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCAT 101714
| || ||| || | ||| | ||| || | |||||||||| | || || || ||||
Sbjct 9569098 TTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCAT 9569157
Query 101715 CTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAG 101774
|||| | |||||| | ||| || || ||| || | | | || | ||| | |
Sbjct 9569158 CTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGG 9569217
Query 101775 TTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTT 101834
| | || |||| || ||||| || ||||| || | ||||| || |||| | |
Sbjct 9569218 TGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGTCTCCTGACTTCT 9569276
Query 101835 GATACAGTTGACAGGAAAGCTTTCCATCACAGA-CATAAA--ATTGACTTAATACATGAC 101891
| || || || ||||| |||| ||| | ||| | | || | | || || |
Sbjct 9569277 GGTA-AGCTGGCAGGACAGCT------CACTGTTCATGTAGGACTGGCAAAGGACTTGGC 9569329
Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951
|||| |||| |||| | ||||| |||| ||||||| |||| | | || ||||
Sbjct 9569330 AAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGATGATTCTTC 9569389
Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011
|||| |||||| |||| || || |||| |||| | | | |||| ||||||| |
Sbjct 9569390 TATCCTCAGGGTTGCTTTTGATTGTGGCAAT-AACTTTGCTGCT-GGTCTACTCCTTGGC 9569447
Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071
|| ||||| | | |||||| |||||| || ||||| ||||||||||| ||||
Sbjct 9569448 CTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACTGAAAGCCAT 9569507
Query 102072 ACACAGGTCCAAGATCTCCTTC 102093
| || || || | |||| ||||
Sbjct 9569508 AAACTGGGCCCAAATCTTCTTC 9569529
>seq256
Length=2651488
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
||||||||||||| || ||||||||||||||||| ||||| || || || | ||||||||
Sbjct 775820 CTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTT 775761
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||| | || || || | || ||||| || ||| ||||| |||||||| |
Sbjct 775760 CCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGA 775701
Query 102153 TGTGCACGCC 102162
| | ||| ||
Sbjct 775700 TCTTCACTCC 775691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361223361418073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |